CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022057.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	86.02	93.98
Os07t0265600-01	Rice	cytosol, nucleus	66.53	50.81
CDY72062	Canola	plastid	60.59	48.15
CDX79495	Canola	nucleus	90.68	24.68
CDX84712	Canola	nucleus	90.25	24.57
CDX92417	Canola	nucleus	60.59	22.2
AT2G32940.1	Thale cress	nucleus	82.2	22.1
VIT_12s0059g01430.t01	Wine grape	nucleus	71.19	18.26
KXG23356	Sorghum	nucleus	66.95	17.93
HORVU0Hr1G012490.1	Barley	nucleus	66.1	17.67
TraesCS5D01G169500.1	Wheat	cytosol	65.68	17.57
TraesCS5A01G165900.1	Wheat	cytosol	65.68	17.55
TraesCS5B01G162300.1	Wheat	mitochondrion	66.53	17.48
Solyc07g049500.2.1	Tomato	nucleus	65.68	17.16
Zm00001d019905_P003	Maize	nucleus	66.95	17.16
GSMUA_Achr9P22630_001	Banana	nucleus	63.98	16.85
KRH20672	Soybean	nucleus	63.56	16.43
CDY16587	Canola	nucleus	60.59	16.21
GSMUA_Achr9P27810_001	Banana	plastid	59.32	16.07
CDY09103	Canola	nucleus	61.02	15.89
CDX92406	Canola	nucleus	59.75	15.6
CDX92405	Canola	nucleus	60.17	15.52
CDX77061	Canola	nucleus	60.59	15.51
CDY48192	Canola	nucleus	60.59	15.51
CDY04475	Canola	nucleus	60.59	15.49
CDY56413	Canola	nucleus	60.59	15.49
CDY59516	Canola	nucleus	58.05	15.12
CDY16595	Canola	nucleus	52.12	13.37
CDY62055	Canola	nucleus	31.78	13.02
CDY04311	Canola	cytosol, nucleus, plastid	44.92	10.82
CDX71410	Canola	nucleus	43.22	10.71
CDY04517	Canola	plastid	43.22	10.66
CDY22332	Canola	plastid	43.64	10.56
CDX94724	Canola	plastid	43.64	10.5
CDY51501	Canola	nucleus	39.41	10.34
CDY41831	Canola	nucleus	44.92	10.15
CDY68174	Canola	nucleus	44.92	10.08
CDY07349	Canola	nucleus	41.1	9.86
CDY28550	Canola	cytosol, plastid	40.25	9.73
CDY23683	Canola	cytosol, nucleus, plastid	44.49	9.67
CDY70429	Canola	plastid	33.9	9.02
CDY25885	Canola	cytosol	34.75	8.12
CDY55876	Canola	cytosol	34.75	7.92
CDY02373	Canola	nucleus	33.47	7.72

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	GO:A0A078JKT7	UniProt:A0A078JKT7	EnsemblPlants:CDY68123	ProteinID:CDY68123
ProteinID:CDY68123.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00069925001	InterPro:IPR003165	InterPro:IPR036397	PFAM:PF02171	PFscan:PS50822
PANTHER:PTHR22891	PANTHER:PTHR22891:SF35	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950
SUPFAM:SSF53098	TMHMM:TMhelix	UniParc:UPI0004EE2E23	:	:	:

Description

BnaAnng26210DBnaAnng26210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKT7]

Coordinates

chrLK036879:-:1514..3739

Molecular Weight (calculated)

26649.8 Da

IEP (calculated)

7.664

GRAVY (calculated)

-0.226

Length

236 amino acids

Sequence
(BLAST)

001: MGMDVSHGSP GRADVPSVAA VLLYSYFACC WFKKLAAVRS QSQKLEMIDS LFQPVDDPVN GDNRELFVEF FKTSNARKPK QIIIFRDGVS ESQFNQVLNI
101: VVDQIIKAYQ RLGETDVPKF TVIVAQKRHH TKLFQAKGHE NVPAGTVVDT KIGTSRPAHY HVLLDEIGFS PDELQNLIHS LSYVNQRSTT ATSIVRYAHL
201: AAAQFAQFTK FEDVSEEKVP QLPRLQERVE SNMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.