CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019905_P003	Maize	nucleus	96.03	91.86
Os07t0265600-01	Rice	cytosol, nucleus	31.78	90.61
TraesCS5A01G165900.1	Wheat	cytosol	85.81	85.62
HORVU0Hr1G012490.1	Barley	nucleus	85.7	85.5
TraesCS5D01G169500.1	Wheat	cytosol	85.58	85.49
TraesCS5B01G162300.1	Wheat	mitochondrion	85.24	83.63
GSMUA_Achr9P22630_001	Banana	nucleus	68.22	67.08
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	17.93	66.95
Bra022057.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	16.23	66.2
VIT_12s0059g01430.t01	Wine grape	nucleus	69.01	66.09
Bra022918.1-P	Field mustard	nucleus	61.86	62.86
CDX84712	Canola	nucleus	61.86	62.86
CDX79495	Canola	nucleus	61.41	62.4
Solyc07g049500.2.1	Tomato	nucleus	63.9	62.35
AT2G32940.1	Thale cress	nucleus	60.5	60.71
KRH20672	Soybean	nucleus	62.09	59.91
OQU86696	Sorghum	nucleus	60.16	58.89
GSMUA_Achr9P27810_001	Banana	plastid	55.85	56.49
EES18816	Sorghum	nucleus	58.0	56.22
EES00570	Sorghum	nucleus	52.78	51.78
OQU91198	Sorghum	nucleus	31.44	37.28
EER90726	Sorghum	cytosol	34.39	35.69
OQU91197	Sorghum	plastid	34.62	34.5
OQU88608	Sorghum	plastid	34.28	34.28
KXG20286	Sorghum	cytosol	35.75	32.11
KXG20965	Sorghum	nucleus	36.32	30.53
OQU82149	Sorghum	nucleus	37.0	30.27
EER97198	Sorghum	nucleus	34.51	29.12
EES18841	Sorghum	nucleus	36.44	28.95
EER91156	Sorghum	nucleus	30.31	28.56
OQU86027	Sorghum	plastid	35.64	28.44
EER92100	Sorghum	cytosol	28.6	24.39
KXG27113	Sorghum	nucleus	29.63	23.9
EER93271	Sorghum	cytosol	22.59	19.66
OQU89939	Sorghum	endoplasmic reticulum, plasma membrane	20.66	18.07

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	UniProt:A0A1B6PCC0	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006306	GO:GO:0006342	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0016043	GO:GO:0030422
GO:GO:0031047	GO:GO:0035197	GO:GO:0040029	GO:GO:0051607	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EnsemblPlants:KXG23356	ProteinID:KXG23356	ProteinID:KXG23356.1	ProteinID:OQU79001.1	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF35	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	EnsemblPlantsGene:SORBI_3008G087200	SUPFAM:SSF101690
SUPFAM:SSF53098	UniParc:UPI00081AB756	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:17969837..17978339

Molecular Weight (calculated)

98575.3 Da

IEP (calculated)

9.187

GRAVY (calculated)

-0.295

Length

881 amino acids

Sequence
(BLAST)

001: MPAETAGAVE VLEDDTVKRT PMARPSNGRE GKPIRLLSNH FAVKLRGVDA VFYQYSVCIK SEDDKVVDGK GIGRKVIDKL LQTYCSELDG KDFAYDGEKC
101: LFTVGPLPQN NFEFTVILEE TSSRAVGGSP VHGSPTQAEK KRVKRSHLAK KFSVGISYAA KIPLRSVALA LRGTETEHAQ DALRVLDIVL RQQQAKRGCL
201: LVRQSFFSDD SRNLVDLTGG VSGCRGLHSS FRTTIGGLSL NMDVSTTMVV TPGPVIDFLL TNQNVRDIRD IDWPRAKKML KKLRVKAKHN NMEFKIIGLS
301: DQPCSRQMFP MKVRNGSIEI QTVDITVHDY FKSKQVELTM PYLPCLDVGK PKRPNYLPIE LCHMLSLQRY TKALSSQQRA TLVEKSRQKP QERMRVVTDA
401: VKSNMYDDDP ILSSCGIEID KQLTRVDARV LSAPTLVVGN SEDCIPNRGR WNYNNKRLLD PVKIERWAIV NFSARCDMSR ISRELINCGR SKGILIERPH
501: TLVDEDSQSR RCSPVERVEK MFEKVKTSLP GPPEFLLCVL PERKNCDIYG PWKKKNLHEM GIVTQCIAPS NKMNDQYFTN VLLKINAKLG GMNSKLALEH
601: RQMIPVVTQI PTLILGMDVS HGSPGRADIP SIAAVVGSRC WPLISRYRAS VRTQSPKVEM IDSLFKPLDD GKDDGIMREL LLDFYQTSQQ RKPKQIIIFR
701: DGVSESQFSQ VLNVELNQII KAYQSMGQGD LPKFTVIIAQ KNHHTKLFQA DSPENVPPGT VVDSGIVHPR QYDFYMCAHA GPIGTSRPTH YHVLLDEIGF
801: SADNLQKLVL SLSYVYQRST TAISVVAPIC YAHLAAAQMG QFMKFEEFAD TSSGSVNSSS SASIPELPRL HADVCSSMFF C

Best Arabidopsis Sequence Match ( AT2G32940.1 )
(BLAST)

001: METSSSLPLS PISIEPEQPS HRDYDITTRR GVGTTGNPIE LCTNHFNVSV RQPDVVFYQY TVSITTENGD AVDGTGISRK LMDQLFKTYS SDLDGKRLAY
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC

Arabidopsis Description

AGO6Protein argonaute 6 [Source:UniProtKB/Swiss-Prot;Acc:O48771]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.