Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008249_P012 | |
| Zm00001d039214_P025 | |
| Zm00001d040429_P012 | |
| Zm00001d044917_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84386 | Sorghum | nucleus | 88.87 | 85.96 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 52.74 | 64.53 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 63.78 | 63.84 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 63.62 | 63.66 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 63.62 | 63.33 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 63.57 | 62.83 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 27.66 | 54.12 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 36.17 | 49.2 |
| Solyc01g096390.2.1 | Tomato | nucleus | 39.56 | 45.95 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 13.75 | 44.89 |
| CDY60335 | Canola | nucleus | 38.17 | 39.81 |
| AT2G40030.1 | Thale cress | nucleus | 39.51 | 38.97 |
| KRH20723 | Soybean | nucleus | 39.97 | 38.56 |
| KRH13386 | Soybean | nucleus | 40.33 | 37.75 |
| Bra000162.1-P | Field mustard | nucleus | 38.74 | 36.67 |
| Zm00001d031457_P009 | Maize | nucleus | 12.57 | 22.52 |
| CDY07630 | Canola | nucleus | 25.86 | 21.99 |
| Zm00001d031459_P001 | Maize | cytosol | 3.23 | 18.98 |
| Zm00001d003203_P003 | Maize | cytosol | 12.57 | 17.58 |
| Zm00001d024583_P003 | Maize | nucleus | 15.44 | 16.27 |
| Zm00001d029055_P010 | Maize | nucleus | 13.44 | 15.5 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | EntrezGene:103654914 |
| MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | UniProt:A0A1D6QSZ1 | ProteinID:AQK60586.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | UniParc:UPI0008459B33 | EnsemblPlantsGene:Zm00001d053872 | EnsemblPlants:Zm00001d053872_P021 | EnsemblPlants:Zm00001d053872_T021 | SEG:seg |
Description
DNA-directed RNA polymerase V subunit 1
Coordinates
chr4:+:242631336..242643632
Molecular Weight (calculated)
214902.0 Da
IEP (calculated)
5.248
GRAVY (calculated)
-0.479
Length
1949 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEDHSVILI SEGAIKSIKL SLSTGEEICT YSINECPVTH PSQLGNPFLG LPLEAGKCES CGASENDKCE GHFGYIELPV PIYHPCHVTE LRQLLSLICL
0101: KCLRIKKGKV KQSNGKGNAA PTLCSYCRDI PALSLKEIKT TDGAIRLELR APHNKHMTER SWNFLDKYGF HHGGCSHHRT LLPEEALNIL KKVPDDTRRK
0201: LAARGYIVQT GYVMKYLPVP PNCLYIPEFT DGQSIMSYDI SIALLKKVLQ KIEQIKRSRS GSPNFESHDA ESCDLQLAIG QYIRLRGTTR GPQDNTKRFT
0301: VGSADSAALS TKQWLEKMRT LFISKGSGFS SRSVLTGDPY IGLGVVGLPS EVAKRMTFEE QVTDININRL QDVVDKGLCL TYRDGQATYA ITVGSKGYTT
0401: LKVGQTISRR IVDGDVVFLN RPPSTHKHSL QAFYAYVHDD HTVKINPLMC GPFSADFDGD CVHIYYPQSL AAKAEALELF SVERQLISSH SGKVNLQLGN
0501: DSLVAMKAMS HTTMLHKELA NQLAMFVPFS LLAPAVIKPV PSWTISQIVQ GAFPANLTCQ GDTHLVRDST IIRLDLGKES VQDSFPDLVS SILREKGPKE
0601: ALQFLNVLEP LLMEFLLLDG LSISLRDFNV PKALLEEAQK DIRNQSLILE QSRCSTSQFV EFRVENNLKN VKQQISDSVG KFSDLGLLID PKKEASMSKV
0701: VQQVGFVGLQ LYREGKLYSR RLVEDCFTNF VNKHLAIGDE YPPEAYGLVQ SSYFHGLNPY EELIHAISTR EAMIRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQLKYGE DDETDSSSVV PPGEPVGVLA ATAISNPAYK AVLDSSQSNN ASWESMKEIL QTRTSYKNDV KDRKVVLFLN DCSCAKKFCK
0901: ERAALAVQSC LKRVTLGDCA TDICIEHQKQ INLDGTSEAA PTLVGHIHLD KGHLERINIS TQDILQKCQE VSGRFGKKKG HLCHIFKKIT FATCDCSFTQ
1001: MPIDGKLHKV PCVQFAFSDD IVLSESIERA VNVIADSVCS VLLDTIIKGD PRIQAAKVIW VESDAASWVK HTRKVSKGES ALEIIVEKDD AVSNGDAWRT
1101: AIDACLPVLN LIDTRRSIPY GIQQVRELIG ISCAFDQVVQ RLSTTVKMVN KGVLKDHLIL VANSMTCTGN LIGFNIAGYK ATFRSLKVQV PFTESTLFTP
1201: MKCFEKAAEK CDSDSLGCVV SSSAWGKHAA VGTGSSFQIL WNENQVCLSY QPELIAYISL YQLKSNKEYG DGLYDFLALV RTDQEKTDYM FLDDVDYLVE
1301: ENAADDMCLS PEPDGTLGKP TFEDNFEEQN IQKGSSWEIG ITTNSSWEQN ASVANDSGDW GGWSSGGGAA AKPADQDNSW EVHAKVQDNS TTDWGGWSVE
1401: KPTGEATVSG EPAETDTWAD KGAKMESDAG DGNWEKSSTP EASKKNDSSE NTWDKRKGDG GDGAWGNRSD DGHGNWEHPS NWNGQSLDVD QDTWGNARGK
1501: KKADGNYCQW EEQPSNYKQK KTNADHDSSY NNVMPSSEIA WNAGDGTGRP NAKSNAESSW GEEDKMESDD HPKVPKESDT WNTGRSNESP WDNTDALQDS
1601: WVKSAARNNN TQDGSWDKVV SMKDLDSLQD SWSKATIQTN DAQNDSWDNV AKNAPDSAAE DSWGAATPAE TTDSGNKEWK SDGWGAKSGN WSSQRNNPGR
1701: PPRRPDERGP PPPRQRFELT VAEKNILLEV EPIKLRVRSI FREACDGVRL NPEDEKFILE KVLEHHPEKQ SKVSGEIDYL TVNKHQTFQD TRCFFVVSTD
1801: GSQADFSYLK CLENFVRKSY TEDADTFCMK YLRPRRRQAP PADVGTASGA PDEVPPSTAA ETEQGTPPAP QAEVPQETWG SPAVPLEGGT HIAGPDSTGD
1901: AVILGEQHDL TPASPAVAPQ VASEPDTTDG TGLLGKAPQA DWGPRFDAD
0101: KCLRIKKGKV KQSNGKGNAA PTLCSYCRDI PALSLKEIKT TDGAIRLELR APHNKHMTER SWNFLDKYGF HHGGCSHHRT LLPEEALNIL KKVPDDTRRK
0201: LAARGYIVQT GYVMKYLPVP PNCLYIPEFT DGQSIMSYDI SIALLKKVLQ KIEQIKRSRS GSPNFESHDA ESCDLQLAIG QYIRLRGTTR GPQDNTKRFT
0301: VGSADSAALS TKQWLEKMRT LFISKGSGFS SRSVLTGDPY IGLGVVGLPS EVAKRMTFEE QVTDININRL QDVVDKGLCL TYRDGQATYA ITVGSKGYTT
0401: LKVGQTISRR IVDGDVVFLN RPPSTHKHSL QAFYAYVHDD HTVKINPLMC GPFSADFDGD CVHIYYPQSL AAKAEALELF SVERQLISSH SGKVNLQLGN
0501: DSLVAMKAMS HTTMLHKELA NQLAMFVPFS LLAPAVIKPV PSWTISQIVQ GAFPANLTCQ GDTHLVRDST IIRLDLGKES VQDSFPDLVS SILREKGPKE
0601: ALQFLNVLEP LLMEFLLLDG LSISLRDFNV PKALLEEAQK DIRNQSLILE QSRCSTSQFV EFRVENNLKN VKQQISDSVG KFSDLGLLID PKKEASMSKV
0701: VQQVGFVGLQ LYREGKLYSR RLVEDCFTNF VNKHLAIGDE YPPEAYGLVQ SSYFHGLNPY EELIHAISTR EAMIRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQLKYGE DDETDSSSVV PPGEPVGVLA ATAISNPAYK AVLDSSQSNN ASWESMKEIL QTRTSYKNDV KDRKVVLFLN DCSCAKKFCK
0901: ERAALAVQSC LKRVTLGDCA TDICIEHQKQ INLDGTSEAA PTLVGHIHLD KGHLERINIS TQDILQKCQE VSGRFGKKKG HLCHIFKKIT FATCDCSFTQ
1001: MPIDGKLHKV PCVQFAFSDD IVLSESIERA VNVIADSVCS VLLDTIIKGD PRIQAAKVIW VESDAASWVK HTRKVSKGES ALEIIVEKDD AVSNGDAWRT
1101: AIDACLPVLN LIDTRRSIPY GIQQVRELIG ISCAFDQVVQ RLSTTVKMVN KGVLKDHLIL VANSMTCTGN LIGFNIAGYK ATFRSLKVQV PFTESTLFTP
1201: MKCFEKAAEK CDSDSLGCVV SSSAWGKHAA VGTGSSFQIL WNENQVCLSY QPELIAYISL YQLKSNKEYG DGLYDFLALV RTDQEKTDYM FLDDVDYLVE
1301: ENAADDMCLS PEPDGTLGKP TFEDNFEEQN IQKGSSWEIG ITTNSSWEQN ASVANDSGDW GGWSSGGGAA AKPADQDNSW EVHAKVQDNS TTDWGGWSVE
1401: KPTGEATVSG EPAETDTWAD KGAKMESDAG DGNWEKSSTP EASKKNDSSE NTWDKRKGDG GDGAWGNRSD DGHGNWEHPS NWNGQSLDVD QDTWGNARGK
1501: KKADGNYCQW EEQPSNYKQK KTNADHDSSY NNVMPSSEIA WNAGDGTGRP NAKSNAESSW GEEDKMESDD HPKVPKESDT WNTGRSNESP WDNTDALQDS
1601: WVKSAARNNN TQDGSWDKVV SMKDLDSLQD SWSKATIQTN DAQNDSWDNV AKNAPDSAAE DSWGAATPAE TTDSGNKEWK SDGWGAKSGN WSSQRNNPGR
1701: PPRRPDERGP PPPRQRFELT VAEKNILLEV EPIKLRVRSI FREACDGVRL NPEDEKFILE KVLEHHPEKQ SKVSGEIDYL TVNKHQTFQD TRCFFVVSTD
1801: GSQADFSYLK CLENFVRKSY TEDADTFCMK YLRPRRRQAP PADVGTASGA PDEVPPSTAA ETEQGTPPAP QAEVPQETWG SPAVPLEGGT HIAGPDSTGD
1901: AVILGEQHDL TPASPAVAPQ VASEPDTTDG TGLLGKAPQA DWGPRFDAD
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.