Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH20723 | Soybean | nucleus | 85.45 | 88.07 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 32.76 | 68.47 |
| Solyc01g096390.2.1 | Tomato | nucleus | 44.86 | 55.66 |
| CDY60335 | Canola | nucleus | 43.56 | 48.53 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 32.47 | 47.17 |
| AT2G40030.1 | Thale cress | nucleus | 44.67 | 47.06 |
| Bra000162.1-P | Field mustard | nucleus | 44.24 | 44.73 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 33.09 | 43.25 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 38.23 | 40.86 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 38.18 | 40.83 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 38.28 | 40.7 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 38.38 | 40.52 |
| Zm00001d053872_P021 | Maize | nucleus | 37.75 | 40.33 |
| OQU84386 | Sorghum | nucleus | 38.28 | 39.55 |
| CDY07630 | Canola | nucleus | 30.07 | 27.31 |
| KRH27976 | Soybean | nucleus | 16.14 | 23.11 |
| KRH77477 | Soybean | nucleus | 15.95 | 22.79 |
| KRG88695 | Soybean | nucleus | 11.72 | 17.54 |
| KRH28855 | Soybean | nucleus | 14.79 | 16.86 |
| KRH40807 | Soybean | nucleus | 14.31 | 16.82 |
| KRH76591 | Soybean | nucleus | 14.75 | 16.8 |
| KRH71957 | Soybean | nucleus | 10.13 | 16.38 |
| KRH33046 | Soybean | nucleus | 12.44 | 15.69 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | EntrezGene:100801412 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 |
| Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | UniProt:A0A0R0G598 | EMBL:ACUP02009712 | EnsemblPlantsGene:GLYMA_15G235900 | GO:GO:0001056 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlants:KRH13386 | ProteinID:KRH13386 | ProteinID:KRH13386.1 |
| ProteinID:KRH13387.1 | ProteinID:KRH13388.1 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 |
| PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0006EE11DA | SEG:seg |
Description
hypothetical protein
Coordinates
chr15:-:44346879..44363540
Molecular Weight (calculated)
231368.0 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.585
Length
2082 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDNPPSSVL DGTVVGIKFG MATRQEICTA SISDSSISHA SQLSNPFLGL PLEFGRCESC GTSEVGKCEG HFGYIELPIP IYHPSHISDL KRMLSMVCLN
0101: CLKLRKTKLP ASSSGLAQRL ISPCCQEDKA ALVSIREVKT SDGACYLALK VSKSKMQNGF WSFLEKYGYR YGGDHTRALL PCEAMEIIKR IPIETKKKLA
0201: GKGYFPQDGY VLKYLPVPPN CLSVPEVSDG VSVMSSDPSI TILRKLLRKV EIIKSSRSGE PNFESHHVEA NDLQSVVDQY FQIRGTSKPA RDIETHFGVN
0301: KELTASSTKA WLEKMRTLFI RKGSGFSSRN VITGDCYKRI NEVGIPVEVA QRITFEERVN IHNIRYLQKL VDEHLCLTYK EGGSTYSLRE GSKGHIYLKP
0401: GQIVHRRIMD GDIVFINRPP TTHKHSLQAL YVYIHEDHTV KINPLICGPL GADFDGDCVH LFYPQSLAAK AEVVELFSVE NQLLSSHSGN LNLQLSTDSL
0501: LSLKMLVKRC FFDRAAANQL AMFILLPLPR PALLKASSGD ACWTSIQILQ CALPLGFDCT GGRYLIRQSE ILEFEFSRDV LPATVNEIAA SVFFGKGPKE
0601: ALNFFDVLQP FLMESLFAEG FSVSLEEFSI SRAIKRIIRK SIGKVSSLLY QLRSLYNELV AQQLEKHIRD VELPIINFAL KSTKLGDLID SKSKSAIDKV
0701: VQQIGFLGQQ LFDRGRFYSK GLVDDVASHF HAKCCYDGDG YPSAEYGLLK GCFFNGLDPY EEMVHSISTR EIMVRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQFEYGI QAGDKSEHLF PAGEPVGVLA ATAMSNPAYK AVLDASPSSN SSWELMKEIL LCKVNFRNEL VDRRVILYLN DCDCGGSYCR
0901: ENAAYSVKDQ LRKVSLKDAA VEFIIEYQQQ RTQKENSETD VGLVGHIYLD EMMLEELKIS MAYVFDKCHE RLKSFSQKKK VNQSLKNIEL SFSESCSSSH
1001: PAAPCLTFWL KNYDSDLDNA VKVLAEKICP VLFKTIIQGD PRISSASIIW VSPDTNTWVR NPYKSSNGEL ALDIILEKEA VKQSGDAWRV VLDACLPVLH
1101: LIDTRRSIPY AIKQIQELLG ISCTFDQAIQ RVAASVKMVA KGVLREHLIL LASSMTCGGN LVGFNIGGYK ALSRQLNIQV PFTDATLFTP KKCFERAAEK
1201: CHTDSLSSIV ASCSWGKHVA VGTGSKFDVV WDANEIKSNE IEGMDVYSFL HMVKSFTNGE EETDACLGED IDDLLEEEYM DLGMSPQHNS GFEAVFEENP
1301: EVLNGSTSNG WDVSSNQGES KTNEWSGWAS SNKAEIKDGR SEIAPKNSWG KTVNQEDSSK SNPWSTSTIA DQTKTKSNEW SAWGSNKSEI PVGWASSNKT
1401: EIKDGRSETA QENSWGKTVN QEDSSKSNAW NTSTTVDHAN TKSNEWSAWG SNQSEIPAGG SKAVQEDSWG SSKWKADVAQ EDNSRLGAWD ANAADQTKSS
1501: EWSGWGKKKD VTQEDNSRLG AWDANAADQT KSRDWSGWGK KKDITQEDNS RLGAWDANAA DQTKSSEWSG WGKKKDVTQE DNSRLGAWDA NTADQTKSNE
1601: WSGWGKKKEV TQEDNSRLGA WDANTADQTK SNEWSGWGKK KEVTQEDNSR LGAWDANAAD QTKSNEWSGW GKKKDVTQED NSRLGAWDAN AADQTKSNEW
1701: SDWGKKKEVT QEDNVQDSWG SGKRKDKVTQ EDNSGSGGWG ANRTDLAKSK SSEWSSWGKN KSEIPAGGSE NVQNDSWGSG KLEDDTQKEN SGSAWVRNKA
1801: ETIDGGSEKP QEDAWNSGNW KAESKVGNAS WGKPKSSESQ AWDSHNQSNQ NSSSQGWESH IASANSESEK GFQWGKQGRD SFKKNRFEGS QGRGSNAGDW
1901: KNRNRPPRAP GQRLDIYSSG EQDVLKDIEP IMQSIRRIMQ QQGYNDGDPL AAEDQLFVLE NVFEHHPDKE TKMGTGIDYV MVNKHSSFQE SRCFYVVCKD
2001: GESKDFSYRK CLANYISKKY PDLAESFLGK YFRKPRARGD QTATPGRDEA ATPGEQTATP GRDEAATPAE QISTPTPMET NE
0101: CLKLRKTKLP ASSSGLAQRL ISPCCQEDKA ALVSIREVKT SDGACYLALK VSKSKMQNGF WSFLEKYGYR YGGDHTRALL PCEAMEIIKR IPIETKKKLA
0201: GKGYFPQDGY VLKYLPVPPN CLSVPEVSDG VSVMSSDPSI TILRKLLRKV EIIKSSRSGE PNFESHHVEA NDLQSVVDQY FQIRGTSKPA RDIETHFGVN
0301: KELTASSTKA WLEKMRTLFI RKGSGFSSRN VITGDCYKRI NEVGIPVEVA QRITFEERVN IHNIRYLQKL VDEHLCLTYK EGGSTYSLRE GSKGHIYLKP
0401: GQIVHRRIMD GDIVFINRPP TTHKHSLQAL YVYIHEDHTV KINPLICGPL GADFDGDCVH LFYPQSLAAK AEVVELFSVE NQLLSSHSGN LNLQLSTDSL
0501: LSLKMLVKRC FFDRAAANQL AMFILLPLPR PALLKASSGD ACWTSIQILQ CALPLGFDCT GGRYLIRQSE ILEFEFSRDV LPATVNEIAA SVFFGKGPKE
0601: ALNFFDVLQP FLMESLFAEG FSVSLEEFSI SRAIKRIIRK SIGKVSSLLY QLRSLYNELV AQQLEKHIRD VELPIINFAL KSTKLGDLID SKSKSAIDKV
0701: VQQIGFLGQQ LFDRGRFYSK GLVDDVASHF HAKCCYDGDG YPSAEYGLLK GCFFNGLDPY EEMVHSISTR EIMVRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQFEYGI QAGDKSEHLF PAGEPVGVLA ATAMSNPAYK AVLDASPSSN SSWELMKEIL LCKVNFRNEL VDRRVILYLN DCDCGGSYCR
0901: ENAAYSVKDQ LRKVSLKDAA VEFIIEYQQQ RTQKENSETD VGLVGHIYLD EMMLEELKIS MAYVFDKCHE RLKSFSQKKK VNQSLKNIEL SFSESCSSSH
1001: PAAPCLTFWL KNYDSDLDNA VKVLAEKICP VLFKTIIQGD PRISSASIIW VSPDTNTWVR NPYKSSNGEL ALDIILEKEA VKQSGDAWRV VLDACLPVLH
1101: LIDTRRSIPY AIKQIQELLG ISCTFDQAIQ RVAASVKMVA KGVLREHLIL LASSMTCGGN LVGFNIGGYK ALSRQLNIQV PFTDATLFTP KKCFERAAEK
1201: CHTDSLSSIV ASCSWGKHVA VGTGSKFDVV WDANEIKSNE IEGMDVYSFL HMVKSFTNGE EETDACLGED IDDLLEEEYM DLGMSPQHNS GFEAVFEENP
1301: EVLNGSTSNG WDVSSNQGES KTNEWSGWAS SNKAEIKDGR SEIAPKNSWG KTVNQEDSSK SNPWSTSTIA DQTKTKSNEW SAWGSNKSEI PVGWASSNKT
1401: EIKDGRSETA QENSWGKTVN QEDSSKSNAW NTSTTVDHAN TKSNEWSAWG SNQSEIPAGG SKAVQEDSWG SSKWKADVAQ EDNSRLGAWD ANAADQTKSS
1501: EWSGWGKKKD VTQEDNSRLG AWDANAADQT KSRDWSGWGK KKDITQEDNS RLGAWDANAA DQTKSSEWSG WGKKKDVTQE DNSRLGAWDA NTADQTKSNE
1601: WSGWGKKKEV TQEDNSRLGA WDANTADQTK SNEWSGWGKK KEVTQEDNSR LGAWDANAAD QTKSNEWSGW GKKKDVTQED NSRLGAWDAN AADQTKSNEW
1701: SDWGKKKEVT QEDNVQDSWG SGKRKDKVTQ EDNSGSGGWG ANRTDLAKSK SSEWSSWGKN KSEIPAGGSE NVQNDSWGSG KLEDDTQKEN SGSAWVRNKA
1801: ETIDGGSEKP QEDAWNSGNW KAESKVGNAS WGKPKSSESQ AWDSHNQSNQ NSSSQGWESH IASANSESEK GFQWGKQGRD SFKKNRFEGS QGRGSNAGDW
1901: KNRNRPPRAP GQRLDIYSSG EQDVLKDIEP IMQSIRRIMQ QQGYNDGDPL AAEDQLFVLE NVFEHHPDKE TKMGTGIDYV MVNKHSSFQE SRCFYVVCKD
2001: GESKDFSYRK CLANYISKKY PDLAESFLGK YFRKPRARGD QTATPGRDEA ATPGEQTATP GRDEAATPAE QISTPTPMET NE
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.