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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH28855 Soybean nucleus 98.63 98.63
KRH40807 Soybean nucleus 90.64 93.45
VIT_18s0001g00860.t01 Wine grape nucleus 92.45 91.2
GSMUA_Achr1P14900_001 Banana nucleus 55.28 90.02
PGSC0003DMT400009249 Potato nucleus 90.26 89.67
Solyc02g083350.2.1 Tomato nucleus 90.26 89.33
GSMUA_Achr1P14890_001 Banana cytosol 23.21 88.52
Bra010510.1-P Field mustard nucleus 87.63 87.77
AT4G35800.1 Thale cress nucleus 87.96 87.38
Zm00001d024583_P003 Maize nucleus 87.52 86.43
EES13372 Sorghum nucleus 87.63 86.21
TraesCS7B01G202000.2 Wheat nucleus 87.14 85.96
TraesCS7D01G297100.1 Wheat nucleus 87.25 85.75
TraesCS7A01G301900.1 Wheat nucleus 87.19 85.69
HORVU5Hr1G114340.1 Barley nucleus 40.28 85.19
TraesCS2D01G571500.1 Wheat nucleus 85.28 84.08
TraesCS2B01G622300.1 Wheat nucleus 85.33 83.86
TraesCS2A01G558100.1 Wheat nucleus 85.28 83.85
Solyc02g083230.2.1 Tomato cytosol, nucleus, peroxisome 12.04 83.33
CDY08876 Canola nucleus 73.56 83.01
TraesCS2D01G427500.2 Wheat nucleus 66.67 82.8
HORVU2Hr1G126750.3 Barley nucleus 85.5 82.51
CDY71816 Canola cytosol 12.86 82.46
TraesCS5D01G499000.1 Wheat nucleus 82.54 82.4
GSMUA_Achr3P00590_001 Banana nucleus 63.44 82.32
TraesCS5B01G499000.1 Wheat nucleus 81.77 82.22
HORVU5Hr1G114400.2 Barley nucleus 79.69 81.75
TraesCS7B01G085700.1 Wheat cytosol 38.59 81.22
TraesCS7D01G182500.1 Wheat cytosol 38.59 81.22
TraesCS5D01G498900.1 Wheat nucleus 82.1 81.21
TraesCS5B01G498800.1 Wheat nucleus 80.57 80.79
TraesCS7A01G180700.1 Wheat cytosol 38.48 80.71
Os05t0151000-00 Rice nucleus 78.98 78.34
EES08565 Sorghum nucleus 79.97 77.8
HORVU7Hr1G037130.2 Barley nucleus 38.59 77.47
Bra011638.1-P Field mustard nucleus 83.52 56.33
CDX69166 Canola cytosol 80.62 55.8
CDX75527 Canola nucleus 82.65 55.6
KRG88695 Soybean nucleus 25.07 32.93
KRH33046 Soybean nucleus 21.84 24.17
KRH71957 Soybean nucleus 16.75 23.76
KRH27976 Soybean nucleus 15.33 19.26
KRH77477 Soybean nucleus 15.27 19.15
KRH20723 Soybean nucleus 16.69 15.1
KRH13386 Soybean nucleus 16.8 14.75
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.10.132.30Gene3D:1.10.150.390Gene3D:1.10.274.100Gene3D:1.20.120.1280
EntrezGene:100804975MapMan:15.1.2.1Gene3D:2.20.25.410Gene3D:2.40.40.20Gene3D:3.30.1360.140Gene3D:3.30.1490.180
EMBL:ACUP02000627ncoils:CoilEnsemblPlantsGene:GLYMA_01G162200GO:GO:0001055GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005665GO:GO:0006139GO:GO:0006351
GO:GO:0006366GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740
GO:GO:0016779InterPro:IPR038120InterPro:IPR038593UniProt:K7K465EnsemblPlants:KRH76591ProteinID:KRH76591
ProteinID:KRH76591.1ProteinID:KRH76592.1PFAM:PF00623PFAM:PF04983PFAM:PF04990PFAM:PF04992
PFAM:PF04997PFAM:PF04998PFAM:PF05000PFAM:PF05001PRINTS:PR01217ScanProsite:PS00115
PANTHER:PTHR19376PANTHER:PTHR19376:SF37InterPro:RNA_pol_II_repeat_eukInterPro:RNA_pol_NInterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3
InterPro:RNA_pol_Rpb1_4InterPro:RNA_pol_Rpb1_5InterPro:RNA_pol_Rpb1_6InterPro:RNA_pol_Rpb1_7InterPro:RNA_pol_Rpb1_7_sfInterPro:RNA_pol_asu
InterPro:Rpb1_funnel_sfSMART:SM00663SUPFAM:SSF64484UniParc:UPI0002337B0DSEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:50028181..50036820
Molecular Weight (calculated)
204032.0 Da
IEP (calculated)
6.057
GRAVY (calculated)
-0.488
Length
1827 amino acids
Sequence
(BLAST)
0001: MDIRFPFSPA EVAKVRMVQF GILSPDEIRQ MSVVQIEHGE TTERGKPKVG GLSDPRLGTI DRKLKCETCT ASMAECPGHF GHLELAKPMF HIGFLKTVLT
0101: IMRCVCFNCS KILADENDHK FKQALRIRNP KNRLKKILDA CKNKSKCEGG DEIDIPGQDT EESVKKSRGG CGAQQPKITI EGMKMIAEYK AQRKKSDDQE
0201: QLPEPVERKQ TLSAERVLGV LKRISDEDCQ LLGLNPKYAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLKRQE RNGSPAHIIS
0301: EFAQLLQFHI ATYFDNELPG LPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPTIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR DDGQRLDLRY LKKSSDHHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQSN RPVMGIVQDT LLGCRKITKR DTFISKDVFM NILMWWEDFD GKVPAPAILK PEPLWTGKQV FNLIIPKQIN
0601: LIRYSSWHSE SERGSITPGD TMVRIEKGEL LTGTLCKKTL GTYSGGLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNAF SIGIGDTIAD ASTMETINQT
0701: ISAAKEKVKQ LIREAHEKKL EAEPGRSMMD SFENRVNQTL NRARDDAGNS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPYGFIDR
0801: TLPHFTKDDL GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIEKQM
0901: LDSLKMKKTE FDRVFRYEFD DENWKPTYML EEPVEDLKTI REFRNVFEAE VQKLEADRFQ LATEIATTGD SSLFLPVNLK RLIWNAQKTF KVDFRRPSDM
1001: HPMEIVEAID KLQERLKVVP GEDLLSQEAQ KNATLLFNIL LRSTFASKRV LEEYRLSREA FEWVVGEIES RFLQSLVASG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKRI KTPSLSVYLR PDVGKTKERA KSVQCALEYT TLRSVTQATE VWYDPDPMST IIEEDVDFVK SYYEMPDEEV
1201: ALEKISPWLL RIELNREMMV DKKLSMADIA EKINLEFDDD LTCIFNDDNA EKLILRIRIM NDEAPKGEIQ DESAEDDVFL KKIESNMLTE MTLRGIPDIN
1301: KVFIKNTKVQ KFDENQGFKP NEEWMLDTEG VNLLAVMCHE DVDVTRTTSN HLIEVIEVLG IEAVRRALLD ELRVVISFDG SYVNYRHLAI LCDTMTYRGH
1401: LMAITRHGIN RNDTGPMMRC SFEETVDILL DAAVYAETDY LRGVTENIML GQLAPIGTGE CALYLNDEML KNAIELQLPS YMDGLDFGMT PARSPISGTP
1501: YHEGLMSPSY LLSPNLRLSP TTDAQFSPYV GGMAFSPTSS PGYSPSSPGY SPSSPGYSPT SPGYSPTSPG YSPTSPTYSP SSPGYSPTSP AYSPTSPSYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPAYSPTSPA YSPTSPAYSP TSPSYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPAY SPTSPGYSPT
1701: SPSYSPTSPS YSPTSPSYNP QSAKYSPSLA YSPSSPRLSP SSPYSPTSPN YSPTSPSYSP TSPSYSPSSP TYSPSSPYNS GVSPDYSPSS PQFSPSTGYS
1801: PSQPGYSPSS TSQYTPQTSD KDDRGTR
Best Arabidopsis Sequence Match ( AT4G35800.1 )
(BLAST)
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.