Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G622300.1 | Wheat | nucleus | 95.77 | 97.53 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 95.56 | 97.36 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 95.25 | 97.3 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 41.36 | 90.62 |
| Zm00001d024583_P003 | Maize | nucleus | 88.54 | 90.59 |
| EES13372 | Sorghum | nucleus | 88.75 | 90.47 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 52.25 | 88.15 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.08 | 87.27 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 13.0 | 87.23 |
| KRH28855 | Soybean | nucleus | 82.67 | 85.66 |
| KRH76591 | Soybean | nucleus | 82.51 | 85.5 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 80.4 | 85.46 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.94 | 85.05 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.51 | 84.94 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 40.73 | 84.73 |
| KRH40807 | Soybean | nucleus | 78.87 | 84.26 |
| AT4G35800.1 | Thale cress | nucleus | 81.19 | 83.58 |
| Bra010510.1-P | Field mustard | nucleus | 80.4 | 83.44 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.52 | 82.58 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 60.8 | 81.75 |
| CDY08876 | Canola | nucleus | 67.56 | 79.0 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 6.76 | 77.58 |
| CDY71816 | Canola | cytosol | 11.62 | 77.19 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.11 | 72.77 |
| Bra011638.1-P | Field mustard | nucleus | 77.28 | 54.01 |
| CDX69166 | Canola | cytosol | 74.75 | 53.6 |
| CDX75527 | Canola | nucleus | 76.7 | 53.46 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 4.91 | 42.86 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 4.97 | 41.23 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 2.11 | 40.0 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 2.75 | 35.14 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 2.64 | 33.78 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 2.8 | 32.92 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 24.78 | 32.91 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 12.68 | 31.45 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 20.34 | 21.65 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 3.91 | 19.47 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 13.58 | 17.16 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 11.09 | 16.39 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 17.01 | 16.33 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 1.0 | 12.84 |
Protein Annotations
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287JTV6]
Coordinates
chrchr2H:-:764585688..764594323
Molecular Weight (calculated)
210222.0 Da
IEP (calculated)
6.231
GRAVY (calculated)
-0.482
Length
1893 amino acids
Sequence
(BLAST)
(BLAST)
0001: SLRRTLSVPG RSPFRRLDLV VSGADDDDAR GGAMDARFPY SPAEVAKVQL VQFGVLSPDE IRQMSVVMIE HAETMERGKA KPGGLSDPRL GTIDRKLKCD
0101: TCMAGMAECP GHFGHLELAK PMFHIGFIKT VLSIMRCVCF NCSKILADEE DTKFQQALKI KNPKNRLRRI YDACKSKKVC SGGDDLEAQD QQDTDEPVKK
0201: RGGCGAQQPN ITVDGMKMVA EFKATKKKND DQDQLPEPVE RKQILTAERV LNVLKRISDD DCRLLGLNPE YARPDWMILQ VLPIPPPPVR PSVMMDTSSR
0301: SEDDLTHQLA MIIRHNENLR RQERNGAPAH IITEFAQLLQ FHIATYFDND LPGQPRATQR SGRPIKSICS RLKAKEGRIR GNLMGKRVDF SARTVITPDP
0401: NINIDQLGVP WSIALNLTYP ETVTPYNIER LKELVEYGPH PPPGKTGAKY IIREDGQRLD LRYVKKSSDQ HLELGYKVER HLNDGDFVLF NRQPSLHKMS
0501: IMGHRIKIMP YSTFRLNLSV TSPYNADFDG DEMNMHVPQS FETRAEVLEL MMVPKCIVSP QANRPVMGIV QDSLLGCRKM TKRDTLIEKD VFMNILMWWE
0601: DFDGKVPAPA ILKPRPIWTG KQVFNLIIPK LINLIRFSAW HAETENGFTT PGDTVVRIEK GELLSGTLCK KTLGASSGSL IHVIWEEVGP DAARKFLGHT
0701: QWLVNYWLLQ NGFSMGIGDT IADADTMEKI NETIANAKAE VRELIKQAQR KELEPEPGRT MMESFENRVN QVLNKARDES GSSAQKSLSE SNNLKAMVTA
0801: GSKGSFINIS QMTACVGQQN VEGQRIPFGF VDRTLPHFTK DNYGPESRGF VENSYLRGLT PQEFFFHAMG GREGLIDTAV KTSETGYIQR RLVKAMEDIM
0901: VKYDGTVRNS LGDVIQFLYG EDGMDAVWIE SQKLDSLKMK KDEFDNVFRY ELNDMNWKPN YMLPDHVEDL KTIREFRNVF EAELQKLEVD RLQLGQEITT
1001: TGECVWPMPV NLKRLIWNAQ KTFKIDLRKP SDMHPMEIVE AIDKLQERLK VVPGDDAMSI EAQKNATLLF NILLRSTFAS KRVLKEYRLT KESFEWVIGE
1101: IESRFLQSLV APGEMIGCVA AQSIGEPATQ MTLNTFHYAG VSAKNVTLGV PRLREIINVA KKIKTPSLSV FLKRGVNSRK ESAKNVQCAL EYTTLRSVTH
1201: ATEIWYDPDP MGTLIPEDVD FVRSYYEMPD EDVDPDKMSP WLLRIELNRE MMVDKKLSMA DIAEKINHEF DDDLSCIFND DNADKLILRV RIANDEAPPK
1301: GGEAQGESAE DDVFLKKIEG NMLTEMALRG IPDINKVFIK KGKVNKFDEK EGFKSEEEWM LDTEGVNLLA VMCHADVDPT RTTSNHLIEV IEVLGIEAVR
1401: RSLLDELRVV ISFDGSYVNY RHLAILCDTM TYRGHLMAIT RHGINRNDTG PLMRCSFEET VDILLDAAVY AESDYLRGVT ENIMLGQLAP IGTGGCGLYL
1501: NDQMLKQAIE LQLPSYIDGL DYGVTPARSP VSGTPYHDGG MMSPLLSPNF RASPLTDAQF SPYVGGMAFS PMPSNYSPSS GGYSPSSPVF SPGPGHSYSP
1601: TSPSYSPASP SYSPASPSYT PGSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPAYCPTSP AYSPTSPAYC PTSPAYSPSS
1701: PSYNPTSPSY SPTSPSYSPT SPSYSPTSPS YIPTSPSYSP TSPTYSPTSP SYRPTSPSYS PTSPAYSPTS PGYSPTSPSY SPTSPSYSPS SAKYSPSHVY
1801: SPSSPRMMSP YSQTSPNYSP TSPSYSPTSP SYAQPSPSYS PASPITTSGG PSPDYTPTSP NYSPTASYSP TAPGYSPTST EPQTSGKDKE TAP
0101: TCMAGMAECP GHFGHLELAK PMFHIGFIKT VLSIMRCVCF NCSKILADEE DTKFQQALKI KNPKNRLRRI YDACKSKKVC SGGDDLEAQD QQDTDEPVKK
0201: RGGCGAQQPN ITVDGMKMVA EFKATKKKND DQDQLPEPVE RKQILTAERV LNVLKRISDD DCRLLGLNPE YARPDWMILQ VLPIPPPPVR PSVMMDTSSR
0301: SEDDLTHQLA MIIRHNENLR RQERNGAPAH IITEFAQLLQ FHIATYFDND LPGQPRATQR SGRPIKSICS RLKAKEGRIR GNLMGKRVDF SARTVITPDP
0401: NINIDQLGVP WSIALNLTYP ETVTPYNIER LKELVEYGPH PPPGKTGAKY IIREDGQRLD LRYVKKSSDQ HLELGYKVER HLNDGDFVLF NRQPSLHKMS
0501: IMGHRIKIMP YSTFRLNLSV TSPYNADFDG DEMNMHVPQS FETRAEVLEL MMVPKCIVSP QANRPVMGIV QDSLLGCRKM TKRDTLIEKD VFMNILMWWE
0601: DFDGKVPAPA ILKPRPIWTG KQVFNLIIPK LINLIRFSAW HAETENGFTT PGDTVVRIEK GELLSGTLCK KTLGASSGSL IHVIWEEVGP DAARKFLGHT
0701: QWLVNYWLLQ NGFSMGIGDT IADADTMEKI NETIANAKAE VRELIKQAQR KELEPEPGRT MMESFENRVN QVLNKARDES GSSAQKSLSE SNNLKAMVTA
0801: GSKGSFINIS QMTACVGQQN VEGQRIPFGF VDRTLPHFTK DNYGPESRGF VENSYLRGLT PQEFFFHAMG GREGLIDTAV KTSETGYIQR RLVKAMEDIM
0901: VKYDGTVRNS LGDVIQFLYG EDGMDAVWIE SQKLDSLKMK KDEFDNVFRY ELNDMNWKPN YMLPDHVEDL KTIREFRNVF EAELQKLEVD RLQLGQEITT
1001: TGECVWPMPV NLKRLIWNAQ KTFKIDLRKP SDMHPMEIVE AIDKLQERLK VVPGDDAMSI EAQKNATLLF NILLRSTFAS KRVLKEYRLT KESFEWVIGE
1101: IESRFLQSLV APGEMIGCVA AQSIGEPATQ MTLNTFHYAG VSAKNVTLGV PRLREIINVA KKIKTPSLSV FLKRGVNSRK ESAKNVQCAL EYTTLRSVTH
1201: ATEIWYDPDP MGTLIPEDVD FVRSYYEMPD EDVDPDKMSP WLLRIELNRE MMVDKKLSMA DIAEKINHEF DDDLSCIFND DNADKLILRV RIANDEAPPK
1301: GGEAQGESAE DDVFLKKIEG NMLTEMALRG IPDINKVFIK KGKVNKFDEK EGFKSEEEWM LDTEGVNLLA VMCHADVDPT RTTSNHLIEV IEVLGIEAVR
1401: RSLLDELRVV ISFDGSYVNY RHLAILCDTM TYRGHLMAIT RHGINRNDTG PLMRCSFEET VDILLDAAVY AESDYLRGVT ENIMLGQLAP IGTGGCGLYL
1501: NDQMLKQAIE LQLPSYIDGL DYGVTPARSP VSGTPYHDGG MMSPLLSPNF RASPLTDAQF SPYVGGMAFS PMPSNYSPSS GGYSPSSPVF SPGPGHSYSP
1601: TSPSYSPASP SYSPASPSYT PGSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPAYCPTSP AYSPTSPAYC PTSPAYSPSS
1701: PSYNPTSPSY SPTSPSYSPT SPSYSPTSPS YIPTSPSYSP TSPTYSPTSP SYRPTSPSYS PTSPAYSPTS PGYSPTSPSY SPTSPSYSPS SAKYSPSHVY
1801: SPSSPRMMSP YSQTSPNYSP TSPSYSPTSP SYAQPSPSYS PASPITTSGG PSPDYTPTSP NYSPTASYSP TAPGYSPTST EPQTSGKDKE TAP
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.