Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018814.1-P | |
| Bra030819.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | Bra018814.1-P | AT1G49590.1 | 23524848 |
| AT4G35800.1 | Bra030819.1-P | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G35800.1 | Thale cress | nucleus | 97.31 | 96.52 |
| CDY71816 | Canola | cytosol | 14.69 | 94.04 |
| KRH28855 | Soybean | nucleus | 87.83 | 87.68 |
| KRH76591 | Soybean | nucleus | 87.77 | 87.63 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 53.89 | 87.61 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 88.93 | 87.58 |
| Solyc02g083350.2.1 | Tomato | nucleus | 87.72 | 86.67 |
| PGSC0003DMT400009249 | Potato | nucleus | 87.12 | 86.41 |
| KRH40807 | Soybean | nucleus | 83.0 | 85.44 |
| Zm00001d024583_P003 | Maize | nucleus | 85.25 | 84.05 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 85.14 | 83.86 |
| EES13372 | Sorghum | nucleus | 85.31 | 83.79 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 85.14 | 83.54 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 85.14 | 83.54 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 39.47 | 83.33 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 21.88 | 83.3 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 83.55 | 82.25 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 83.55 | 81.98 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 83.44 | 81.92 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 65.46 | 81.17 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 81.09 | 80.82 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 80.21 | 80.52 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 83.44 | 80.4 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 78.23 | 80.12 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 61.62 | 79.83 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 80.43 | 79.43 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 78.84 | 78.92 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 37.55 | 78.92 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 37.55 | 78.92 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 37.28 | 78.07 |
| Os05t0151000-00 | Rice | nucleus | 77.19 | 76.44 |
| EES08565 | Sorghum | nucleus | 78.34 | 76.09 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 10.96 | 75.76 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 37.17 | 74.51 |
| Bra011638.1-P | Field mustard | nucleus | 92.6 | 62.35 |
| Bra020267.1-P | Field mustard | nucleus | 24.18 | 32.19 |
| Bra003294.1-P | Field mustard | nucleus | 21.6 | 24.94 |
| Bra007345.1-P | Field mustard | nucleus | 21.6 | 24.02 |
| Bra027611.1-P | Field mustard | nucleus | 15.24 | 19.27 |
| Bra000162.1-P | Field mustard | nucleus | 16.23 | 14.38 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 3.56 | 13.6 |
Protein Annotations
Description
AT4G35800 (E=0.0) NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase
Coordinates
chrA08:+:14913749..14920896
Molecular Weight (calculated)
203028.0 Da
IEP (calculated)
5.655
GRAVY (calculated)
-0.511
Length
1824 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GHLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEDEHK FKQAMKIKNP KNRLKKILDA CKNKTKCEGG DDIDDVQTQD TDEPVKKSRG GCGATQPKIT IEGMKMIAEF KVTKKKNDEI
0201: DQLPEPAERK QTLGADRVLS VLKRISDEDC QLLGFNPKYA RPDWMILEVL PIPPPPDDLT HQLAMIIRHN ENLKRQEKNG APAHIISEFT QLLQFHIATY
0301: FDNELPGQPR ATQKSGRPIK SICSRLKAKE GRIRGNLMGK RVDFSARTVI TPDPTINIDE LGVPWSIALN LTYPETVTPY NIERLKELVD YGPHPPPGKT
0401: GAKYIIRDDG QRLDLRYLKK SSDHHLELGY KVERHLIDGD FVLFNRQPSL HKMSIMGHRI RIMPYSTFRL NLSVTSPYNA DFDGDEMNMH VPQSFETRAE
0501: VLELMMVPKC IVSPQANRPV MGIVQDTLLG CRKITKRDTF IEKDVFMNTL MWWQDFDGKV PAPTILKPRP LWTGKQVFNL IIPKQINLFR YSAWHSDAET
0601: GYITPGDTQV RIERGELLAG TLCKKTLGTG NGSLVHVIWE EVGPDAARKF LGHTQWLVNY WLLQNGFTIG IGDTIADSQT MEKINETISC AKTAVKDLIR
0701: QFQEKKLDPE PGRTMTETFE NRVNQVLNKA RDDAGSSAQK SLAETNNLKA MVTAGSKGSF INISQMTACV GQQNVEGKRI PFGFDGRTLP HFTKDDYGPE
0801: SRGFVENSYL RGLTPQEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSLGDVIQ FLYGEDGMDA VWIESQKLDS LKMKKAEFDR
0901: TFKYEIDDEN WNPTYLSDEH LEDLKGIREL RDVFDAEYQK LEADRFQLGT EIATNGDSTW PLPVNIKRHI WNAQKTFKID LRKISDMHPV EIVDAVDKLQ
1001: ERLLVVPGED GLSVEAQKNA TLFFNILLRS TLASKRVLEE YKLSREAFEW VIGEIESRFL QSLVAPGEMI GCVAAQSIGE PATQMTLNTF HYAGVSAKNV
1101: TLGVPRLREI INVAKRIKTP SLSVYLTPEA SKSKEGAKTV QCALEYTTLR SVTQATEVWY DPDPMSTIIE EDFEFVRSYY EMPDEDVSPD KISPWLLRIE
1201: LNREMMVDKK LSMADIAEKI NLEFDDDLTC IFNDDNAEKL ILRIRIMNDE GAKGEAQDES AEDDVFLKKI ESNMLTEMAL RGIPDINKVF IKQVRKSKFD
1301: EDEGFKTSEE WMLDTEGVNL LAVMCHEDVD PKRTTSNHLI EIIEVLGIEA VRRALLDELR VVISFDGSYV NYRHLAILCD TMTYRGHLMA ITRHGINRND
1401: TGPLMRCSFE ETVDILLDAA AYAETDCLRG VTENIMLGQL APIGTGDCEL YLNDEMLKNA IELQLPSYMD GLEFGMTPAR SPMSGTPYHE SMMSPNYLLS
1501: PNMRLSPMSD AQFSPYVGGM AFSPSSSPGY SPSSPGYSPT SPGYSPTSPG YSPTSPGYSP TSPTYSPSSP GYSPTSPAYS PTSPSYSPTS PSYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP TSPAYSPTSP AYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPAYSPTSPG YSPTSPSYSP
1701: TSPSYGPTSP SYNPQSAKYS PSLAYSPSNA RLSPASPYSP TSPNYSPTSP SYSPTSPSYS PSSPTYSPSS PYSSGASPDY SPSAGYSPTL PGYSPSSTGQ
1801: YTPHEGDKND KTGKDAGTDD KSKP
0101: IMRCVCFNCS KILADEDEHK FKQAMKIKNP KNRLKKILDA CKNKTKCEGG DDIDDVQTQD TDEPVKKSRG GCGATQPKIT IEGMKMIAEF KVTKKKNDEI
0201: DQLPEPAERK QTLGADRVLS VLKRISDEDC QLLGFNPKYA RPDWMILEVL PIPPPPDDLT HQLAMIIRHN ENLKRQEKNG APAHIISEFT QLLQFHIATY
0301: FDNELPGQPR ATQKSGRPIK SICSRLKAKE GRIRGNLMGK RVDFSARTVI TPDPTINIDE LGVPWSIALN LTYPETVTPY NIERLKELVD YGPHPPPGKT
0401: GAKYIIRDDG QRLDLRYLKK SSDHHLELGY KVERHLIDGD FVLFNRQPSL HKMSIMGHRI RIMPYSTFRL NLSVTSPYNA DFDGDEMNMH VPQSFETRAE
0501: VLELMMVPKC IVSPQANRPV MGIVQDTLLG CRKITKRDTF IEKDVFMNTL MWWQDFDGKV PAPTILKPRP LWTGKQVFNL IIPKQINLFR YSAWHSDAET
0601: GYITPGDTQV RIERGELLAG TLCKKTLGTG NGSLVHVIWE EVGPDAARKF LGHTQWLVNY WLLQNGFTIG IGDTIADSQT MEKINETISC AKTAVKDLIR
0701: QFQEKKLDPE PGRTMTETFE NRVNQVLNKA RDDAGSSAQK SLAETNNLKA MVTAGSKGSF INISQMTACV GQQNVEGKRI PFGFDGRTLP HFTKDDYGPE
0801: SRGFVENSYL RGLTPQEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSLGDVIQ FLYGEDGMDA VWIESQKLDS LKMKKAEFDR
0901: TFKYEIDDEN WNPTYLSDEH LEDLKGIREL RDVFDAEYQK LEADRFQLGT EIATNGDSTW PLPVNIKRHI WNAQKTFKID LRKISDMHPV EIVDAVDKLQ
1001: ERLLVVPGED GLSVEAQKNA TLFFNILLRS TLASKRVLEE YKLSREAFEW VIGEIESRFL QSLVAPGEMI GCVAAQSIGE PATQMTLNTF HYAGVSAKNV
1101: TLGVPRLREI INVAKRIKTP SLSVYLTPEA SKSKEGAKTV QCALEYTTLR SVTQATEVWY DPDPMSTIIE EDFEFVRSYY EMPDEDVSPD KISPWLLRIE
1201: LNREMMVDKK LSMADIAEKI NLEFDDDLTC IFNDDNAEKL ILRIRIMNDE GAKGEAQDES AEDDVFLKKI ESNMLTEMAL RGIPDINKVF IKQVRKSKFD
1301: EDEGFKTSEE WMLDTEGVNL LAVMCHEDVD PKRTTSNHLI EIIEVLGIEA VRRALLDELR VVISFDGSYV NYRHLAILCD TMTYRGHLMA ITRHGINRND
1401: TGPLMRCSFE ETVDILLDAA AYAETDCLRG VTENIMLGQL APIGTGDCEL YLNDEMLKNA IELQLPSYMD GLEFGMTPAR SPMSGTPYHE SMMSPNYLLS
1501: PNMRLSPMSD AQFSPYVGGM AFSPSSSPGY SPSSPGYSPT SPGYSPTSPG YSPTSPGYSP TSPTYSPSSP GYSPTSPAYS PTSPSYSPTS PSYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP TSPAYSPTSP AYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPAYSPTSPG YSPTSPSYSP
1701: TSPSYGPTSP SYNPQSAKYS PSLAYSPSNA RLSPASPYSP TSPNYSPTSP SYSPTSPSYS PSSPTYSPSS PYSSGASPDY SPSAGYSPTL PGYSPSSTGQ
1801: YTPHEGDKND KTGKDAGTDD KSKP
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.