Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G182500.1 | Wheat | cytosol | 49.01 | 83.06 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 26.24 | 80.58 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 14.07 | 78.41 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 8.5 | 75.76 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 91.16 | 73.28 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 91.37 | 72.77 |
| CDY71816 | Canola | cytosol | 14.0 | 72.28 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 89.06 | 70.47 |
| Zm00001d024583_P003 | Maize | nucleus | 87.49 | 69.57 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 87.42 | 69.4 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 66.35 | 69.32 |
| EES13372 | Sorghum | nucleus | 87.36 | 69.2 |
| KRH28855 | Soybean | nucleus | 82.94 | 66.78 |
| KRH76591 | Soybean | nucleus | 82.8 | 66.67 |
| KRH40807 | Soybean | nucleus | 80.29 | 66.65 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 17.74 | 66.41 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.87 | 66.29 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.94 | 66.09 |
| Bra010510.1-P | Field mustard | nucleus | 81.17 | 65.46 |
| AT4G35800.1 | Thale cress | nucleus | 81.51 | 65.2 |
| CDY08876 | Canola | nucleus | 68.32 | 62.08 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 46.97 | 61.59 |
| CDX69166 | Canola | cytosol | 80.63 | 44.92 |
| CDX75527 | Canola | nucleus | 80.08 | 43.37 |
| Bra011638.1-P | Field mustard | nucleus | 79.2 | 43.0 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 31.75 | 33.48 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 16.32 | 33.38 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 25.22 | 22.39 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 16.86 | 17.4 |
| TraesCS3D01G522400.1 | Wheat | plastid | 15.91 | 14.53 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 18.29 | 13.82 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.2.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 | Gene3D:3.30.1490.180 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | InterPro:IPR038120 | InterPro:IPR038593 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04990 |
| PFAM:PF04992 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 |
| InterPro:RNA_pol_Rpb1_7 | InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| EnsemblPlantsGene:TraesCS2D01G427500 | EnsemblPlants:TraesCS2D01G427500.2 | TIGR:cd02584 | TIGR:cd02733 | SEG:seg | : |
Description
No Description!
Coordinates
chr2D:-:539439438..539445945
Molecular Weight (calculated)
166934.0 Da
IEP (calculated)
6.497
GRAVY (calculated)
-0.392
Length
1471 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFPHSPA EVAKVQLVRF GALSPDEIRQ MSVAVIEHAE TREKGKPKPG GLSDPRLGTI DRRTNCETCM AGAAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADEVDPM DNRFMEALRI KNPKTRLRKI NEACKSKKVC SVGEDDLEGQ DQQHTNEPVK KRGGCGARQP NITIDGMKMV AEFKVTNKRN
0201: DDQDQLPEPV EPKQILSAER VLNVLKHISD RDCLLLGLDP KYARPDWMIL QVLPIPPPPM RPSVMMDTCS RSEDDLTHQL AMIIRHNENL RRQETNGASA
0301: HIITEFAQLL QFHIATYFDN DLPGQPRTTQ RSGRPIKSIC SRLKGKEGRI RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKKLVEYGP HPPPGKTGAK YIIREDGQRL DLCYVKKSSD QHLELGYKVE RHLTDGDFVL LNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGSKK ITKRDTLIEK DVFMNILMWW EDFDGKVPAP SIYKPRPIWT GKQVFNLIIP
0601: KEINLIRFSA WHDADAEKES GFITPSDTMV RIEKGELLSG ILCKKTLGTS IGGLIHVIWE EVGPDAARKF LGHTQWLVNY WLLQHGFSIG IGDTIADAGT
0701: MKKISDTISK AKNDVDELIK QAHDKKLEPE PGRTMMESFE NRVNQVLNKA RDDAGSSAQK SLPESNNLKA MVTAGSKGSF INISQMTACV GQQNVEGKRI
0801: PFGFAGRTLP HFTQNNYSPE SRGFVENSYL RGLTPQEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSVGDVIQ FLYGEDGMDA
0901: VWIEPQKLDS LGMKKAEFDS AFRYELDDEN WRPTYMSPKY ADDLKTIHKF RIVFEAEFQK LEADRLQLGT EIATTGDITW PMPVNLKRLI WNAQKTFKID
1001: LRRPSDMHPM EIVEAMDKLQ ERLKVVPGDD AMSIEAQKNA TLLFNILLRS TFASKRVLKE YGLTRESFEW VIGEIESRFL QSLVAPGEMI GCVAAQSIGE
1101: PATQMTLNSF HYAGVSAKNV TLGVPRLTEI INVAKKIKTP SLSVFLKPEV SKKKELAKNV QCALEYTTLC SVIHATEIWY DPDPLGTTIE EDVEFVKSYY
1201: EMPDEDINLD KLSPWLLRIE LNREMMVDKR LSMAEIAEKI KHEFDDDLSC IFNDDNADKL ILRIRIKNDD EAPKQHENDG VFLKEIDSNM LTELALGGVP
1301: DINKVFIKEG EVNKFDEKDG FTQKAKNKEW MLDTEGVNLL AVMCHEDVDA TRTTSNHLIE VIEVLGIEAV RRSLLDELRV VISFDGSYVN YRHLAILCDT
1401: MTYKGHLMAI TRHGINRNDT GPLMRCSFEE TVDILLDAAV YAESDYLRCH REHYTWPARS YWYRRLWIVS E
0101: IMRCVCFNCS KILADEVDPM DNRFMEALRI KNPKTRLRKI NEACKSKKVC SVGEDDLEGQ DQQHTNEPVK KRGGCGARQP NITIDGMKMV AEFKVTNKRN
0201: DDQDQLPEPV EPKQILSAER VLNVLKHISD RDCLLLGLDP KYARPDWMIL QVLPIPPPPM RPSVMMDTCS RSEDDLTHQL AMIIRHNENL RRQETNGASA
0301: HIITEFAQLL QFHIATYFDN DLPGQPRTTQ RSGRPIKSIC SRLKGKEGRI RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKKLVEYGP HPPPGKTGAK YIIREDGQRL DLCYVKKSSD QHLELGYKVE RHLTDGDFVL LNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGSKK ITKRDTLIEK DVFMNILMWW EDFDGKVPAP SIYKPRPIWT GKQVFNLIIP
0601: KEINLIRFSA WHDADAEKES GFITPSDTMV RIEKGELLSG ILCKKTLGTS IGGLIHVIWE EVGPDAARKF LGHTQWLVNY WLLQHGFSIG IGDTIADAGT
0701: MKKISDTISK AKNDVDELIK QAHDKKLEPE PGRTMMESFE NRVNQVLNKA RDDAGSSAQK SLPESNNLKA MVTAGSKGSF INISQMTACV GQQNVEGKRI
0801: PFGFAGRTLP HFTQNNYSPE SRGFVENSYL RGLTPQEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSVGDVIQ FLYGEDGMDA
0901: VWIEPQKLDS LGMKKAEFDS AFRYELDDEN WRPTYMSPKY ADDLKTIHKF RIVFEAEFQK LEADRLQLGT EIATTGDITW PMPVNLKRLI WNAQKTFKID
1001: LRRPSDMHPM EIVEAMDKLQ ERLKVVPGDD AMSIEAQKNA TLLFNILLRS TFASKRVLKE YGLTRESFEW VIGEIESRFL QSLVAPGEMI GCVAAQSIGE
1101: PATQMTLNSF HYAGVSAKNV TLGVPRLTEI INVAKKIKTP SLSVFLKPEV SKKKELAKNV QCALEYTTLC SVIHATEIWY DPDPLGTTIE EDVEFVKSYY
1201: EMPDEDINLD KLSPWLLRIE LNREMMVDKR LSMAEIAEKI KHEFDDDLSC IFNDDNADKL ILRIRIKNDD EAPKQHENDG VFLKEIDSNM LTELALGGVP
1301: DINKVFIKEG EVNKFDEKDG FTQKAKNKEW MLDTEGVNLL AVMCHEDVDA TRTTSNHLIE VIEVLGIEAV RRSLLDELRV VISFDGSYVN YRHLAILCDT
1401: MTYKGHLMAI TRHGINRNDT GPLMRCSFEE TVDILLDAAV YAESDYLRCH REHYTWPARS YWYRRLWIVS E
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.