Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G513100.1 | Wheat | plastid | 94.84 | 92.15 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 87.33 | 91.66 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 72.11 | 90.63 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 20.31 | 86.05 |
| KXG34194 | Sorghum | nucleus | 57.27 | 58.47 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 21.61 | 58.29 |
| Os02t0152800-01 | Rice | cytosol | 15.53 | 51.23 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 42.24 | 34.93 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 18.51 | 20.91 |
| Os02t0152600-01 | Rice | plasma membrane | 3.35 | 19.22 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 10.19 | 18.89 |
| Os02t0152700-01 | Rice | nucleus | 4.47 | 17.31 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 14.53 | 15.91 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 13.23 | 15.27 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 17.2 | 14.9 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 17.02 | 14.79 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 16.71 | 14.7 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 16.71 | 14.56 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 6.21 | 13.91 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 13.35 | 12.98 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS3D01G522400 | EnsemblPlants:TraesCS3D01G522400.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:+:603588740..603597634
Molecular Weight (calculated)
178679.0 Da
IEP (calculated)
8.586
GRAVY (calculated)
-0.451
Length
1610 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSQPSSLT TQLPRSLTLT QLSSNRSIHQ VKAQPMKEEF PVTHPSQLAG NPALGLPLQL GHCDSCGATD LAKCEGHFGF IKLPVSVYHP SHIAELTKIL
0101: NMICFSCLQF KNCKKQKSVE KESNFTSCSY CQDLPPIHVA KVKKSNGALT LELRVPSRKE LEEGFWSFLD QFGFHTKGSS HCHRLFAEEV QKIMEKISEK
0201: TRRQIAAKGY ILQDGFVMSN LPVPPNCLRA YNVLDETLMC SPDASTNLLR KIVLNVHRIN NSRVGPPTFK EHEVEADDLQ VAIADYIKHA GTARGPQDIT
0301: FKSLPATKQW QQKMKSLCIS KSSSFSCRGV ITGDPYIPMN VVGVPGEVAR RMSVQERVTD YNIAQLQGMM DRGLCLTHED ANSIMHSLDV GKANKKRTIL
0401: KVGETVNRRI LDGDAVFVNR PPSTDKHSVQ AMYVRVHTDH TIKINPLICG PLGADFDGDC VHIFFPRSVS ARAEAIELFT VEKQLVSSHN AKLNFQLKND
0501: CLLALKKMSA RKYSRREANE LLNAMFTAGL IPKKRLSGRP EWSFAQILET VLPQENKILI RDLVAGTITI SSVLSTKNPR EAIEFLNLLQ PLLMESLFTD
0601: GFSVSLRDFN VQNPIPQTIQ HQTLDLDKLR KPIVDFITSS DIRFLVDQKR DSAMTKVVEQ IGFLGHQLQR NGRLYSGSLV EDCVSKSLSK CGSSTNGCHP
0701: LEAHGFVRNS LCNGLNPYED LLHSISAREK TIRASKGLVE PGVLFKNMMA MLRDVVACYD GTIRNSCGNS VVKFDSRNSS SSVTPGDPVG ILAATAVTNA
0801: AYKAVLDPNQ NNMASWDSMK EVLLTRASSR NENDQKIILY LNKCSCGDNF CMERASLAVQ ACLKRTKVED CATEFSIHYQ QQNIQATHCL VGHIHLDKKQ
0901: LDEMNISMQG ILQKCQKEIY RCGKKKGQVN QLMKRVVISS EYMCYQDADD EEQVSCLQFF LTKSVTTQSE SSARVVQLMA NTISPILLDT IIKGDPRVQE
1001: VNIIWAEPQD TCWVQNSGTE QKGELALVIT MDKDSTGESG DVWGTAMDAC IPVMDLIDTT RSVPYSIQRV REGFGISSAF GRVTQHLSKA VGMVTKSVLE
1101: EHLTTVASSI TCTGNLHGFN SYGYKATFKA LKIQAPFMKA TRARPLQCFE EGAEKVYSDQ LDSVVSTCSW GNPAPIGTGS AFKIHWNDGN TSASNENLGG
1201: YGLYEFLTEV ETTRATEDNM IVPYGSCLYD VDNLQEDEIE EDEVLCLGGN SPISWTDRPK SNLLLHDLQG WRAEQGHQKV PVANWQHGKH VTTKSSGTSG
1301: WNQSSSTTKV YQRRQRNSNW GSDATQQDGN PCWNKAYVAG PSNFAITGPS SGTSGWNQSS STTKVYQRRQ LDSNWSSDAT QQDGNASWKK ANVAGQGNFA
1401: ITGPSSSGGW SRKTNNLGRG RRGGRGAIWK SEGSHRGGNS RWKAQRANTT SAPNFHNSGP SNYGGRNIKT GRGPAWRSNG PNRGGSNSEQ RGSSNFTLAE
1501: QQIHAQVDPI MKEVKRIIRE SRDGIKLSGD DERFIVENIL MYHPEKEKKM AGNNNYIMVA KHQKFHSSRC LYVASSDGPP TDFSYKKCLE NMIRIHYPHE
1601: ASSFCRKYFQ
0101: NMICFSCLQF KNCKKQKSVE KESNFTSCSY CQDLPPIHVA KVKKSNGALT LELRVPSRKE LEEGFWSFLD QFGFHTKGSS HCHRLFAEEV QKIMEKISEK
0201: TRRQIAAKGY ILQDGFVMSN LPVPPNCLRA YNVLDETLMC SPDASTNLLR KIVLNVHRIN NSRVGPPTFK EHEVEADDLQ VAIADYIKHA GTARGPQDIT
0301: FKSLPATKQW QQKMKSLCIS KSSSFSCRGV ITGDPYIPMN VVGVPGEVAR RMSVQERVTD YNIAQLQGMM DRGLCLTHED ANSIMHSLDV GKANKKRTIL
0401: KVGETVNRRI LDGDAVFVNR PPSTDKHSVQ AMYVRVHTDH TIKINPLICG PLGADFDGDC VHIFFPRSVS ARAEAIELFT VEKQLVSSHN AKLNFQLKND
0501: CLLALKKMSA RKYSRREANE LLNAMFTAGL IPKKRLSGRP EWSFAQILET VLPQENKILI RDLVAGTITI SSVLSTKNPR EAIEFLNLLQ PLLMESLFTD
0601: GFSVSLRDFN VQNPIPQTIQ HQTLDLDKLR KPIVDFITSS DIRFLVDQKR DSAMTKVVEQ IGFLGHQLQR NGRLYSGSLV EDCVSKSLSK CGSSTNGCHP
0701: LEAHGFVRNS LCNGLNPYED LLHSISAREK TIRASKGLVE PGVLFKNMMA MLRDVVACYD GTIRNSCGNS VVKFDSRNSS SSVTPGDPVG ILAATAVTNA
0801: AYKAVLDPNQ NNMASWDSMK EVLLTRASSR NENDQKIILY LNKCSCGDNF CMERASLAVQ ACLKRTKVED CATEFSIHYQ QQNIQATHCL VGHIHLDKKQ
0901: LDEMNISMQG ILQKCQKEIY RCGKKKGQVN QLMKRVVISS EYMCYQDADD EEQVSCLQFF LTKSVTTQSE SSARVVQLMA NTISPILLDT IIKGDPRVQE
1001: VNIIWAEPQD TCWVQNSGTE QKGELALVIT MDKDSTGESG DVWGTAMDAC IPVMDLIDTT RSVPYSIQRV REGFGISSAF GRVTQHLSKA VGMVTKSVLE
1101: EHLTTVASSI TCTGNLHGFN SYGYKATFKA LKIQAPFMKA TRARPLQCFE EGAEKVYSDQ LDSVVSTCSW GNPAPIGTGS AFKIHWNDGN TSASNENLGG
1201: YGLYEFLTEV ETTRATEDNM IVPYGSCLYD VDNLQEDEIE EDEVLCLGGN SPISWTDRPK SNLLLHDLQG WRAEQGHQKV PVANWQHGKH VTTKSSGTSG
1301: WNQSSSTTKV YQRRQRNSNW GSDATQQDGN PCWNKAYVAG PSNFAITGPS SGTSGWNQSS STTKVYQRRQ LDSNWSSDAT QQDGNASWKK ANVAGQGNFA
1401: ITGPSSSGGW SRKTNNLGRG RRGGRGAIWK SEGSHRGGNS RWKAQRANTT SAPNFHNSGP SNYGGRNIKT GRGPAWRSNG PNRGGSNSEQ RGSSNFTLAE
1501: QQIHAQVDPI MKEVKRIIRE SRDGIKLSGD DERFIVENIL MYHPEKEKKM AGNNNYIMVA KHQKFHSSRC LYVASSDGPP TDFSYKKCLE NMIRIHYPHE
1601: ASSFCRKYFQ
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.