Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G032760.1 | Barley | cytosol | 26.07 | 87.89 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 88.68 | 73.77 |
| TraesCS3D01G522400.1 | Wheat | plastid | 90.63 | 72.11 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 83.61 | 69.82 |
| TraesCS3A01G513100.1 | Wheat | plastid | 90.24 | 69.76 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 25.53 | 54.77 |
| KXG34194 | Sorghum | nucleus | 56.28 | 45.72 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 3.2 | 27.7 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 40.52 | 26.32 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 4.14 | 24.42 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 3.98 | 22.37 |
| Os02t0152800-01 | Rice | cytosol | 7.1 | 18.65 |
| Os02t0152700-01 | Rice | nucleus | 5.78 | 17.79 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 18.5 | 15.82 |
| Os02t0152600-01 | Rice | plasma membrane | 2.97 | 13.52 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 1.01 | 13.0 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 8.12 | 12.04 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 16.55 | 11.9 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 12.8 | 11.51 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 16.39 | 11.09 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 7.57 | 10.66 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 2.26 | 10.28 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 12.65 | 9.11 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 5.31 | 8.91 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 0.23 | 2.03 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 0.23 | 2.03 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 0.23 | 1.86 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:HORVU3Hr1G112670 | EnsemblPlants:HORVU3Hr1G112670.15 | UniProt:M0XPZ5 | PFAM:PF00623 |
| PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000296696F | SEG:seg | : |
Description
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:M0XPZ5]
Coordinates
chrchr3H:+:686740040..686745284
Molecular Weight (calculated)
141979.0 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.492
Length
1281 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNVVGVPDEV ARRMSVQEHV TDYNIAQLQD MMDRGLCLTH KDANSITHSL DVGKENKKRT ILKVGETVNR RILDGDVVFI NRPPSTDKHS VQAMYVRVHT
0101: DHTIKINPLI CGPLGADFDG DCVHIFFPRS VSARAEAMEL FMVEKQLVSS HNEKLNFRLK NDCLLALKKI SGRKYSRREA NQLMNAMFTG GLIPKKRLSG
0201: GPEWSFAQIL ETVLPEENKI LIRDLAAGTV TISSVLSTKN PKEAIEFLNL LQPLLMESLF TDGFSVSLRD FNFHNPIPQT TQHQTLDLDK LRKPIVDLVT
0301: SSDIRFLVDQ KSDSAMTKIV EQIGFLGHQL QRNGRLYSSS LVEDCLSKSL SKCGSSTNGC HPLEAHGFVR NSFWNGLNPY EDLLHSISAR EKTIRASKGL
0401: VEPGDLFKNM MAMLRDVVAC YDGSIRNSCG NSIIKFDLTN SSSSVTPGDP VGILAATAVT NAAYKAVLDP NQNNMTSWDS MKEVLLTRAS SRNENDKKII
0501: LYLNKCSCGN NFCMERASLA VQACLKRTKV EDCATEFSIQ YQQQNIQATH CLVGHIHLDK KQLDEMNISM EDILQKCQEE IYRCGKKKGQ ANQLMKRVAV
0601: ISSECMCYQD ADDKERVSCL QFFLTESVTT KMSESSARVV QMMANTISPI LLDTMIKGDK RVQEVNIVWV EPQETCWVQN SGKEQKGELA LVVTMDKNST
0701: GESGDVWGTA MDACIPVMDL IDTTRSVPYS IQQVQQVFGI SSAFGRVTQH LSKAVGMVTK SVLEEHRTTV ASSMTCTGNL HGFNSYGYKA TFKSLKIQAP
0801: FMKATLARPL QCFEEGAEKV YSDQLDSVVS TCSWGNPAPI GTGSAFKIHW NDGNTSAGNE NLGGYGLYEF LAEVEATRAT EDNIIVPYSS CLYDVDNLQD
0901: DEIEEDGILR LGGNSPIAWT DRPQSNLLLQ DLQGSRAEQG HQTVPVANWR HGKHVATKSS GTSGWNQSSC TMKVYQRRQR NSNPSSDATQ QDGNPSWNKA
1001: YVAGPSSFAI TGPSSGTSGW NQSSSTTKVY QKRQLDSNWS SDETQQDGNP SCKKANVAGQ SNFAITGASS SDGWSRKNNN LGRGRGGGRG AVWKSEGSHR
1101: GGNSRWKAQR ANTTSAPNFR ISGPSNYGGR NIKTGNPGPY RGRGAAWRSN GPNRGGSNSG QRGSSNFTLV EQQIHAQVDP IMKEVKRIIR ESRDGIKLSG
1201: DDEMFIVKNI LMYHPEKEKK MAGNNNYIMV AKHQKFHSSR CLYVVSSDGP PTDFSYKKCL ENMIRIHYPR DASSFCRKYF Q
0101: DHTIKINPLI CGPLGADFDG DCVHIFFPRS VSARAEAMEL FMVEKQLVSS HNEKLNFRLK NDCLLALKKI SGRKYSRREA NQLMNAMFTG GLIPKKRLSG
0201: GPEWSFAQIL ETVLPEENKI LIRDLAAGTV TISSVLSTKN PKEAIEFLNL LQPLLMESLF TDGFSVSLRD FNFHNPIPQT TQHQTLDLDK LRKPIVDLVT
0301: SSDIRFLVDQ KSDSAMTKIV EQIGFLGHQL QRNGRLYSSS LVEDCLSKSL SKCGSSTNGC HPLEAHGFVR NSFWNGLNPY EDLLHSISAR EKTIRASKGL
0401: VEPGDLFKNM MAMLRDVVAC YDGSIRNSCG NSIIKFDLTN SSSSVTPGDP VGILAATAVT NAAYKAVLDP NQNNMTSWDS MKEVLLTRAS SRNENDKKII
0501: LYLNKCSCGN NFCMERASLA VQACLKRTKV EDCATEFSIQ YQQQNIQATH CLVGHIHLDK KQLDEMNISM EDILQKCQEE IYRCGKKKGQ ANQLMKRVAV
0601: ISSECMCYQD ADDKERVSCL QFFLTESVTT KMSESSARVV QMMANTISPI LLDTMIKGDK RVQEVNIVWV EPQETCWVQN SGKEQKGELA LVVTMDKNST
0701: GESGDVWGTA MDACIPVMDL IDTTRSVPYS IQQVQQVFGI SSAFGRVTQH LSKAVGMVTK SVLEEHRTTV ASSMTCTGNL HGFNSYGYKA TFKSLKIQAP
0801: FMKATLARPL QCFEEGAEKV YSDQLDSVVS TCSWGNPAPI GTGSAFKIHW NDGNTSAGNE NLGGYGLYEF LAEVEATRAT EDNIIVPYSS CLYDVDNLQD
0901: DEIEEDGILR LGGNSPIAWT DRPQSNLLLQ DLQGSRAEQG HQTVPVANWR HGKHVATKSS GTSGWNQSSC TMKVYQRRQR NSNPSSDATQ QDGNPSWNKA
1001: YVAGPSSFAI TGPSSGTSGW NQSSSTTKVY QKRQLDSNWS SDETQQDGNP SCKKANVAGQ SNFAITGASS SDGWSRKNNN LGRGRGGGRG AVWKSEGSHR
1101: GGNSRWKAQR ANTTSAPNFR ISGPSNYGGR NIKTGNPGPY RGRGAAWRSN GPNRGGSNSG QRGSSNFTLV EQQIHAQVDP IMKEVKRIIR ESRDGIKLSG
1201: DDEMFIVKNI LMYHPEKEKK MAGNNNYIMV AKHQKFHSSR CLYVVSSDGP PTDFSYKKCL ENMIRIHYPR DASSFCRKYF Q
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.