Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0572600-01 | Rice | cytosol | 81.08 | 26.61 |
| Zm00001d031459_P001 | Maize | cytosol | 54.73 | 24.4 |
| Os09t0555200-01 | Rice | cytosol | 47.3 | 22.01 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 40.54 | 12.55 |
| CDY68589 | Canola | cytosol | 39.19 | 10.88 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 97.97 | 10.18 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 97.97 | 10.18 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 100.0 | 9.88 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 94.59 | 9.81 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 76.35 | 7.61 |
| Solyc08g080210.2.1 | Tomato | nucleus | 45.27 | 5.56 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 55.41 | 4.9 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 44.59 | 4.61 |
| KRH27976 | Soybean | nucleus | 42.57 | 4.33 |
| KRH77477 | Soybean | nucleus | 41.89 | 4.26 |
| CDY32191 | Canola | nucleus | 40.54 | 4.16 |
| CDX93859 | Canola | nucleus | 40.54 | 4.15 |
| Bra027611.1-P | Field mustard | nucleus | 39.19 | 4.02 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 39.19 | 3.99 |
| CDY49206 | Canola | nucleus | 39.19 | 3.97 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 27.7 | 3.2 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 2.03 | 3.0 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 21.62 | 1.62 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 14.86 | 1.54 |
| Zm00001d031457_P009 | Maize | nucleus | 10.14 | 1.38 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 1.35 | 1.35 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 1.35 | 1.35 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 1.35 | 1.24 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 12.16 | 1.01 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 12.16 | 1.01 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 12.84 | 1.0 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 0.68 | 0.26 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 0.0 | 0.0 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 0.0 | 0.0 |
| CDY50743 | Canola | nucleus | 0.0 | 0.0 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 0.0 | 0.0 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G000370.1 | EnsemblPlantsGene:HORVU0Hr1G000370 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | SUPFAM:SSF64484 | UniParc:UPI000295F959 |
| UniProt:M0VCV5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:2614519..2615364
Molecular Weight (calculated)
16970.7 Da
IEP (calculated)
9.020
GRAVY (calculated)
-0.128
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLDTIKKK VIPNLLALLV KGFLEFKKVE IQCQEDRELV VKVVMSEDHC KSVKFWATLQ KSCIAIMELI DWERSRPGSV YDIFCSYGID SAWKYFVESL
101: RSKTDDIGRN IRREHLLVVA NCLSVSGQFH GLSSQGLKQQ RTRLSISS
101: RSKTDDIGRN IRREHLLVVA NCLSVSGQFH GLSSQGLKQQ RTRLSISS
0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.