Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G000370.1 | Barley | extracellular | 12.55 | 40.54 |
| Os09t0555200-01 | Rice | cytosol | 22.38 | 33.65 |
| CDY32191 | Canola | nucleus | 99.58 | 32.96 |
| Os04t0572600-01 | Rice | cytosol | 30.33 | 32.15 |
| Zm00001d031459_P001 | Maize | cytosol | 21.76 | 31.33 |
| Bra027611.1-P | Field mustard | nucleus | 91.42 | 30.28 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 75.52 | 24.85 |
| Solyc08g080210.2.1 | Tomato | nucleus | 39.54 | 15.67 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 45.4 | 15.14 |
| KRH27976 | Soybean | nucleus | 41.42 | 13.62 |
| KRH77477 | Soybean | nucleus | 40.59 | 13.31 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 33.89 | 11.37 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 33.68 | 11.3 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 34.52 | 11.12 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 33.05 | 11.07 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 33.68 | 10.75 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 36.61 | 10.45 |
| Bra000162.1-P | Field mustard | nucleus | 21.76 | 5.05 |
| Bra010510.1-P | Field mustard | nucleus | 13.6 | 3.56 |
| Bra020267.1-P | Field mustard | nucleus | 9.83 | 3.43 |
| Zm00001d031457_P009 | Maize | nucleus | 6.28 | 2.76 |
| Bra003294.1-P | Field mustard | nucleus | 8.16 | 2.47 |
| Bra011638.1-P | Field mustard | nucleus | 13.39 | 2.36 |
| Bra007345.1-P | Field mustard | nucleus | 6.9 | 2.01 |
Protein Annotations
| EnsemblPlants:Bra041010.1 | EnsemblPlants:Bra041010.1-P | EnsemblPlantsGene:Bra041010 | Gene3D:3.10.450.40 | ncoils:Coil | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF40 | PFAM:PF11523 | SUPFAM:SSF64484 | UniParc:UPI000253EBB9 | UniProt:M4FIT1 | MapMan:35.1 |
Description
AT1G63020 (E=1e-211) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase
Coordinates
chrScaffold000372:+:8520..10575
Molecular Weight (calculated)
53451.5 Da
IEP (calculated)
8.712
GRAVY (calculated)
-0.265
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMSSWVCHF HISKKVLKQK QLDVESVVSS LNKQYANRKK ELKLDVIDLE IQSTNHCSWD DKSMEDDRFC ITVTVLEAST HGSLELDAIR LVLIPFLLDS
101: PVKGYGEIKK VEILWADRPK APKRNKKHMA GELFVKVTMH GVRGKKNIWS ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVADT
201: GKGMLREHLL LVADCLSVTG EFVALNPKGW SKQRQAESTP APFTQACFSS PSQCFLKAAK EGVTDELQGS IDALAWGKVP SFGTGDQFEI IISPKDHGFS
301: STPVKVYDFL SSTATLPKRK ASSLPKSDNF TVQPFPLLDT ALSKAVKTLD GKGLTRSQLR TIFTWDDIEK LSRSLKRILY NYEIDATLNE RDERLLMMAL
401: LFHPNRDEKL GPGFQGIKVA NSKHGNARCF EVVRTDGTTE DFSYHKCVLG ATEIIAPKRV NFYKAKYLRN GTVQAGAI
101: PVKGYGEIKK VEILWADRPK APKRNKKHMA GELFVKVTMH GVRGKKNIWS ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVADT
201: GKGMLREHLL LVADCLSVTG EFVALNPKGW SKQRQAESTP APFTQACFSS PSQCFLKAAK EGVTDELQGS IDALAWGKVP SFGTGDQFEI IISPKDHGFS
301: STPVKVYDFL SSTATLPKRK ASSLPKSDNF TVQPFPLLDT ALSKAVKTLD GKGLTRSQLR TIFTWDDIEK LSRSLKRILY NYEIDATLNE RDERLLMMAL
401: LFHPNRDEKL GPGFQGIKVA NSKHGNARCF EVVRTDGTTE DFSYHKCVLG ATEIIAPKRV NFYKAKYLRN GTVQAGAI
0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.