Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67702 | Canola | nucleus | 90.7 | 94.96 |
| Bra007345.1-P | Field mustard | nucleus | 82.53 | 79.51 |
| AT3G57660.1 | Thale cress | nucleus | 79.75 | 75.45 |
| KRH33046 | Soybean | nucleus | 57.03 | 54.57 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 58.04 | 54.23 |
| KRH71957 | Soybean | nucleus | 43.8 | 53.73 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 47.47 | 50.07 |
| Solyc10g080350.1.1 | Tomato | nucleus | 53.04 | 49.97 |
| Os06t0612200-01 | Rice | nucleus | 7.09 | 47.26 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.8 | 45.57 |
| Zm00001d029055_P010 | Maize | nucleus | 47.47 | 44.38 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 45.57 | 43.45 |
| KXG22455 | Sorghum | nucleus | 47.59 | 43.42 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 45.38 | 43.32 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 45.57 | 43.22 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 45.44 | 40.38 |
| Bra020267.1-P | Field mustard | nucleus | 24.43 | 28.18 |
| Bra010510.1-P | Field mustard | nucleus | 24.94 | 21.6 |
| Bra027611.1-P | Field mustard | nucleus | 14.75 | 16.15 |
| Bra011638.1-P | Field mustard | nucleus | 25.38 | 14.8 |
| Bra000162.1-P | Field mustard | nucleus | 15.57 | 11.95 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 2.47 | 8.16 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.1.1 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | EnsemblPlantsGene:Bra003294 | EnsemblPlants:Bra003294.1 |
| EnsemblPlants:Bra003294.1-P | InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | UniProt:M4CGG1 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI00025415B3 | SEG:seg | : |
Description
AT3G57660 (E=3e-259) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding
Coordinates
chrA07:+:12439517..12447582
Molecular Weight (calculated)
178627.0 Da
IEP (calculated)
7.834
GRAVY (calculated)
-0.473
Length
1580 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTEQDVRNHS VLKVTNPVLL DTVERPVPGG LYDPLMGPLD DKTPCKTCSR ISLFCPGHCG HIELVYPIYH PLLFNLLYTF LQRTCFFCHH FMKWSEVDGC
0101: VSQLKVIIKG DIVAAKKFGS EATESSEECE DSDIRKQRWT SFQFAEVTDL LKKTLGLKSW KCGYCGKKAV ILEKPMFGWV RKEVEKATDN GDNVIREIKV
0201: KNSENIVESD DDSAIDEQSE VEDEGAKKKR GKSSKAAKEF KEHKKKTKIN VLPSEVREIL KDLWRNHPEF CSFIGDLWQS GSEKNDYSMF FLESILVPPT
0301: KFRPPTKGGD SVMEHPQTAG LNKVLESNIA LGNARTNQLE KSKIVSRWMD LQESVNVLFD SKTSSVKSQR EQGTGICQVL EKKEGLFRQN IMGKRVNHAC
0401: RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR KAIINGPDIH PGATQYSDKV STMKLPSSRK ARIAIANKLF SSRGVTTKLG KTCDINLECK
0501: TVYRHMHDGD VVLVNRQPTL HKPSIMAHIV RVLKGEKTLR LHYANCSTYN ADFDGDEMNV HFPQDEISRS EAYNIVNANN QYARPSNGDP LRALIQDHIV
0601: SSVLLTKGDT FMDRDEFNQL LFSSGVTDMV LSSFSGRSGK KVTQSASNTE LLTVTPAILK PVPLWTGKQV ITSVLNEITK GHPPFSVEKS TKLPVDFFKC
0701: RTRESNKNKS WKHDFDEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GSNAAGNLLS VFSRLFTVFL QIHGFTCGVD DLIILKDVDE ERTKQLQECE
0801: GVGEKVLRKT FGIDVNAQID PQDMKSSIER ILYEDGEPAL ASLDRRIVSE LNKCSGKGVM NDLLSDGLLK TPGRNCISLM TISGAKGSKV NFQQISSHLG
0901: QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLKPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKNLE SLKVNYDCTV RDADGSIIQF
1001: QYGEDGVDVH RSSFIEKFKE LTLNQDMILE TCSEDMLSGS NSYITDLPIT LKKRAEKFVE SMPMDERIAS KMVRQEDLLK LVKSKYFASL AQPGEPVGVL
1101: AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT ASANIKTPIM TCPLLKGKTK DDASHITDKL RKITVADIIK SMEVSVIPFA VYKGRVSSFD
1201: PKKKKQKGRV CSIHKLKINL YKPEHYPKHT DITDEDWQET MTVRYLRKLE DAIQKHMTML CRIRGIKKQA ADEDYEESSE DENKEPLSTS GVDDDTEMDS
1301: EDENEEVSKE GTQQPKKKKR ERFVGHKKDR HIFVECKGET FEVHFKFLSK QPHMLLAPVA QKTAQKVYIQ NYGRIERCTL ANCGDPQMIY YGDKPKERED
1401: ISNEEKKAWP ALHASGVDFS DIWEFQDKLD VRYLYSNSIH DMLNTFGVEA ARETIIREIN HVFKSYGISV SFRHLNLIAD YMTFSGGYRP MSRFGGIAES
1501: TSPFCRMTFE TATKFIVQAA TYGEVDRLET PSARICLGLP ALSGTGGFDL LQRIEVINDI KRTNDVDDEE HVNEKMRLCR
0101: VSQLKVIIKG DIVAAKKFGS EATESSEECE DSDIRKQRWT SFQFAEVTDL LKKTLGLKSW KCGYCGKKAV ILEKPMFGWV RKEVEKATDN GDNVIREIKV
0201: KNSENIVESD DDSAIDEQSE VEDEGAKKKR GKSSKAAKEF KEHKKKTKIN VLPSEVREIL KDLWRNHPEF CSFIGDLWQS GSEKNDYSMF FLESILVPPT
0301: KFRPPTKGGD SVMEHPQTAG LNKVLESNIA LGNARTNQLE KSKIVSRWMD LQESVNVLFD SKTSSVKSQR EQGTGICQVL EKKEGLFRQN IMGKRVNHAC
0401: RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR KAIINGPDIH PGATQYSDKV STMKLPSSRK ARIAIANKLF SSRGVTTKLG KTCDINLECK
0501: TVYRHMHDGD VVLVNRQPTL HKPSIMAHIV RVLKGEKTLR LHYANCSTYN ADFDGDEMNV HFPQDEISRS EAYNIVNANN QYARPSNGDP LRALIQDHIV
0601: SSVLLTKGDT FMDRDEFNQL LFSSGVTDMV LSSFSGRSGK KVTQSASNTE LLTVTPAILK PVPLWTGKQV ITSVLNEITK GHPPFSVEKS TKLPVDFFKC
0701: RTRESNKNKS WKHDFDEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GSNAAGNLLS VFSRLFTVFL QIHGFTCGVD DLIILKDVDE ERTKQLQECE
0801: GVGEKVLRKT FGIDVNAQID PQDMKSSIER ILYEDGEPAL ASLDRRIVSE LNKCSGKGVM NDLLSDGLLK TPGRNCISLM TISGAKGSKV NFQQISSHLG
0901: QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLKPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKNLE SLKVNYDCTV RDADGSIIQF
1001: QYGEDGVDVH RSSFIEKFKE LTLNQDMILE TCSEDMLSGS NSYITDLPIT LKKRAEKFVE SMPMDERIAS KMVRQEDLLK LVKSKYFASL AQPGEPVGVL
1101: AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT ASANIKTPIM TCPLLKGKTK DDASHITDKL RKITVADIIK SMEVSVIPFA VYKGRVSSFD
1201: PKKKKQKGRV CSIHKLKINL YKPEHYPKHT DITDEDWQET MTVRYLRKLE DAIQKHMTML CRIRGIKKQA ADEDYEESSE DENKEPLSTS GVDDDTEMDS
1301: EDENEEVSKE GTQQPKKKKR ERFVGHKKDR HIFVECKGET FEVHFKFLSK QPHMLLAPVA QKTAQKVYIQ NYGRIERCTL ANCGDPQMIY YGDKPKERED
1401: ISNEEKKAWP ALHASGVDFS DIWEFQDKLD VRYLYSNSIH DMLNTFGVEA ARETIIREIN HVFKSYGISV SFRHLNLIAD YMTFSGGYRP MSRFGGIAES
1501: TSPFCRMTFE TATKFIVQAA TYGEVDRLET PSARICLGLP ALSGTGGFDL LQRIEVINDI KRTNDVDDEE HVNEKMRLCR
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.