Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029055_P010 | Maize | nucleus | 87.01 | 89.17 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 62.07 | 64.88 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 61.84 | 64.71 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 61.89 | 64.35 |
| Os06t0612200-01 | Rice | nucleus | 8.6 | 62.87 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 62.18 | 60.57 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 51.96 | 60.08 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.29 | 54.55 |
| CDY65464 | Canola | nucleus | 27.42 | 50.69 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 49.31 | 50.5 |
| CDX67702 | Canola | nucleus | 42.9 | 49.24 |
| KRH33046 | Soybean | nucleus | 46.48 | 48.76 |
| Solyc10g080350.1.1 | Tomato | nucleus | 47.17 | 48.72 |
| CDY06084 | Canola | nucleus | 42.67 | 48.59 |
| CDX72007 | Canola | nucleus | 42.67 | 48.14 |
| KRH71957 | Soybean | nucleus | 35.45 | 47.67 |
| Bra003294.1-P | Field mustard | nucleus | 43.42 | 47.59 |
| AT3G57660.1 | Thale cress | nucleus | 45.61 | 47.31 |
| Bra007345.1-P | Field mustard | nucleus | 44.52 | 47.01 |
| CDY65462 | Canola | nucleus | 9.47 | 45.81 |
| EES11045 | Sorghum | nucleus | 22.34 | 27.82 |
| EES13372 | Sorghum | nucleus | 23.04 | 21.49 |
| EES08565 | Sorghum | nucleus | 23.15 | 21.35 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 14.38 | 16.78 |
| KXG34194 | Sorghum | nucleus | 12.7 | 13.95 |
| OQU84386 | Sorghum | nucleus | 15.3 | 13.15 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A1B6PAK0 | InterPro:DNA-dir_RNA_pol1_lsu |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | EnsemblPlants:KXG22455 | ProteinID:KXG22455 | ProteinID:KXG22455.1 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | EnsemblPlantsGene:SORBI_3009G217200 | SUPFAM:SSF64484 | UniParc:UPI00081ADB01 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:56146649..56166181
Molecular Weight (calculated)
193633.0 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.575
Length
1732 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADGQPIQAA SEEVDSLHFS FYSDDEIKRI SIKKITKLER LDAKNLPVPG GLLDPAMGPI NDTDTCKSCG QNSVRCPGHF GHIELAKPLF NPLLFMSLRN
0101: LLHVTCFYCH KFRLNKEQVD RYVNELELLV KGDIVGAKNL EDSVKEAYLS EEDENITETT SGDKSSSVKD NKTWTSVQLK EVLSIFSKIM KKRQTKCAKC
0201: DMKSPTISSP IFGWLVKDTS ASAVRANAIA DFKLKGDGDA HNSGDTGVSG LDEETTSPGM VSKGSINEVR RLSDDAVKEM VASSGKKHLL PTEVESILKD
0301: LWNNEARFCM LLCDFQKNTL SEPEKRRGYE MFFLNSLLVA PNRFRPSTNS SLGMMEHPQS VLLSKVQEAN LALQHHNASS NHMDVIRRWM DLQRSVNVLY
0401: DSSKGLVKSE KNAHGIRQLL EKKEGILRQK MMGKRVNYAC RSVISPDPYL AVNEIGIPPV FATRLTYPEK VTPWNTKKLQ EAIRNGADIH PGATHYRDKN
0501: NTYKLQAVPA KRHSVAKMLP ASRGSICQPG RDPNCEFESK VVYRHLQDGD IVLVNRQPTL HKPSMMAHFV RVLPGERTLR MHYANCSTYN ADFDGDEMNV
0601: HFPQDEISRA EAMNIVDANK QYIGPRSGDA VRGLIQDHII GAVLLTKRDT FLTREEYSQL VFGSCMPSSN RGSRHPGKKV SAIEDYGTLE LVRPAIWKPK
0701: PLWTGKQVIT TILNHLTKGR PPFTVEQKGK IPKEYLKEGD PFAQEEKDSP AQQQEEDPSA QKEKEDSLAR KEDPSAQKEK QEDPSAQKET QEDPSAKKET
0801: QEDPSAQKEK DSSVKKEKEK QNRIWKQKQK QKQDDCSELV LYIHDNELIK GIVDKAQFGK YGIVHTVHEL YGADIAGILL STFSRLFTLF LQLHGFTCGI
0901: DDLLLLQKAD KLRSDILSGS EKCSEEVHLK FTGAGEDLKG DPVKLHMEVE KAVRSKGESD TGSLDNLMKS ALSGITTEVN KNLFPDGLQK PFPGNCLSLM
1001: TTTGAKGGPV NMNQISSLLG QQELEGKRVP RMVSGKTLPC FPPWDISSRA GGFISDRFLT GLRPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKCLE
1101: SLKVSYDHTV RDVDGSIVQF QYGEDGVDVL KTSFLKEFKE LANNRKAVLA KLGGHSTKPT YNQYITKLPT KLNSDAEEFL EHSKEFQHCR YNIEAEELKE
1201: LLEVKYLSSL VDPGEAVGVV AAQSIGEPST QMTLNTFHLA GRGDLNVTLG IPRLKEILMT ASANIKTPVM KCPLLEHTSM DDAKMVAAKL MRVRVADIVE
1301: KIEVCTVPFY NCNGHVSTLY KLQMKLYPED QLESGLTVNE CQATLRTVFV DAMEHAIEKH LDLLHKINEI RAVKVKDTDG SLSDGGEESE SRHADGGDTV
1401: TSDDDDDQND NDDDLGTDAE KMKRQEKDEM EYDDDTENEE GMGSESEESD DDPAGDDSQE ADKEHKIKSE TTSVDDLSYS AKKGKKSKDN HGTAKLEEKN
1501: QNKGRLGDQK QDQITKRRKK LTRTIHVESN DLDFEIHYAF LDEPHILLAQ IAKKIARTIF VKACNNIDDC KIVKPRDDHA RIQTAGVNFE VVWNLNEYIS
1601: VHDITSNDIH AILKTYGVEA ARNTIINEVS GVFKPYGIDV DMRHLSMIAD FMTLDGGYRP MNRIGIGQFS TSPFGKMTFE TATKFIVEAA THGEADFLEC
1701: PSASVCLGKP PKVGTGIFGL LQNLELEQPM ET
0101: LLHVTCFYCH KFRLNKEQVD RYVNELELLV KGDIVGAKNL EDSVKEAYLS EEDENITETT SGDKSSSVKD NKTWTSVQLK EVLSIFSKIM KKRQTKCAKC
0201: DMKSPTISSP IFGWLVKDTS ASAVRANAIA DFKLKGDGDA HNSGDTGVSG LDEETTSPGM VSKGSINEVR RLSDDAVKEM VASSGKKHLL PTEVESILKD
0301: LWNNEARFCM LLCDFQKNTL SEPEKRRGYE MFFLNSLLVA PNRFRPSTNS SLGMMEHPQS VLLSKVQEAN LALQHHNASS NHMDVIRRWM DLQRSVNVLY
0401: DSSKGLVKSE KNAHGIRQLL EKKEGILRQK MMGKRVNYAC RSVISPDPYL AVNEIGIPPV FATRLTYPEK VTPWNTKKLQ EAIRNGADIH PGATHYRDKN
0501: NTYKLQAVPA KRHSVAKMLP ASRGSICQPG RDPNCEFESK VVYRHLQDGD IVLVNRQPTL HKPSMMAHFV RVLPGERTLR MHYANCSTYN ADFDGDEMNV
0601: HFPQDEISRA EAMNIVDANK QYIGPRSGDA VRGLIQDHII GAVLLTKRDT FLTREEYSQL VFGSCMPSSN RGSRHPGKKV SAIEDYGTLE LVRPAIWKPK
0701: PLWTGKQVIT TILNHLTKGR PPFTVEQKGK IPKEYLKEGD PFAQEEKDSP AQQQEEDPSA QKEKEDSLAR KEDPSAQKEK QEDPSAQKET QEDPSAKKET
0801: QEDPSAQKEK DSSVKKEKEK QNRIWKQKQK QKQDDCSELV LYIHDNELIK GIVDKAQFGK YGIVHTVHEL YGADIAGILL STFSRLFTLF LQLHGFTCGI
0901: DDLLLLQKAD KLRSDILSGS EKCSEEVHLK FTGAGEDLKG DPVKLHMEVE KAVRSKGESD TGSLDNLMKS ALSGITTEVN KNLFPDGLQK PFPGNCLSLM
1001: TTTGAKGGPV NMNQISSLLG QQELEGKRVP RMVSGKTLPC FPPWDISSRA GGFISDRFLT GLRPQEYYFH CMAGREGLVD TAVKTSRSGY LQRCLMKCLE
1101: SLKVSYDHTV RDVDGSIVQF QYGEDGVDVL KTSFLKEFKE LANNRKAVLA KLGGHSTKPT YNQYITKLPT KLNSDAEEFL EHSKEFQHCR YNIEAEELKE
1201: LLEVKYLSSL VDPGEAVGVV AAQSIGEPST QMTLNTFHLA GRGDLNVTLG IPRLKEILMT ASANIKTPVM KCPLLEHTSM DDAKMVAAKL MRVRVADIVE
1301: KIEVCTVPFY NCNGHVSTLY KLQMKLYPED QLESGLTVNE CQATLRTVFV DAMEHAIEKH LDLLHKINEI RAVKVKDTDG SLSDGGEESE SRHADGGDTV
1401: TSDDDDDQND NDDDLGTDAE KMKRQEKDEM EYDDDTENEE GMGSESEESD DDPAGDDSQE ADKEHKIKSE TTSVDDLSYS AKKGKKSKDN HGTAKLEEKN
1501: QNKGRLGDQK QDQITKRRKK LTRTIHVESN DLDFEIHYAF LDEPHILLAQ IAKKIARTIF VKACNNIDDC KIVKPRDDHA RIQTAGVNFE VVWNLNEYIS
1601: VHDITSNDIH AILKTYGVEA ARNTIINEVS GVFKPYGIDV DMRHLSMIAD FMTLDGGYRP MNRIGIGQFS TSPFGKMTFE TATKFIVEAA THGEADFLEC
1701: PSASVCLGKP PKVGTGIFGL LQNLELEQPM ET
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.