Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | EER89414 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | EER88795 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13372 | Sorghum | nucleus | 83.55 | 84.49 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 21.3 | 83.51 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.14 | 81.21 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 48.4 | 81.02 |
| KRH28855 | Soybean | nucleus | 77.8 | 79.97 |
| KRH76591 | Soybean | nucleus | 77.8 | 79.97 |
| Solyc02g083350.2.1 | Tomato | nucleus | 77.85 | 79.2 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.13 | 79.17 |
| PGSC0003DMT400009249 | Potato | nucleus | 77.32 | 78.96 |
| KRH40807 | Soybean | nucleus | 74.44 | 78.89 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 58.84 | 78.48 |
| Bra010510.1-P | Field mustard | nucleus | 76.09 | 78.34 |
| AT4G35800.1 | Thale cress | nucleus | 76.41 | 78.03 |
| Os05t0151000-00 | Rice | nucleus | 76.2 | 77.69 |
| CDY08876 | Canola | nucleus | 64.22 | 74.49 |
| CDY71816 | Canola | cytosol | 10.92 | 71.93 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.02 | 71.76 |
| Bra011638.1-P | Field mustard | nucleus | 73.38 | 50.87 |
| CDX75527 | Canola | nucleus | 73.22 | 50.63 |
| CDX69166 | Canola | cytosol | 71.09 | 50.57 |
| EES11045 | Sorghum | nucleus | 24.65 | 33.29 |
| KXG22455 | Sorghum | nucleus | 21.35 | 23.15 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 14.16 | 17.92 |
| KXG34194 | Sorghum | nucleus | 14.27 | 16.99 |
| OQU84386 | Sorghum | nucleus | 16.03 | 14.94 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr5:-:57259892..57268178
Molecular Weight (calculated)
209568.0 Da
IEP (calculated)
5.901
GRAVY (calculated)
-0.405
Length
1878 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVRFPHSPA EVAKVELVQF GILSPDEIRQ MSVAQIEYAE TMEKGKPKAG GLSDPRMGTV DRKIKCQTCM SGMAECPGHF GHLELAKPMF HIGFMKTVLS
0101: IMRCVCFNCS KILVDEDNTK FKQALKIRNP KNRLKRIYDA CKTKKVCGEG DDLDVQQQQD TDEHVNRRGG CGAQQPIITV DGVKMLVEFK APKKKNDDQE
0201: QLSELVEPKQ ILSAERVLNV LKNISDKESL LLGLHPKLAR PDWMILQVLP IPPPPVRPSV MMGTSSKSED DLTHQLAMII RHNENLRRQE RNGAPAHIIE
0301: EFSQLLQFHI ATYFDNELPG QPRATQRSGR PIKSICSRLK AKEGRVRGNL MGKRVDFSAR TVITPDPNIN IDEVGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVLNGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQSN KPVMGIVQDT LLGCRKITKR DTLIEKDVFM NILMWWEDFD GKIPAPAILK PRPIWTGKQV FNLIIPRQIN
0601: LIRFCSWHSD EEKGFVTPSD TVVRIEKGEL LSGTLCKKTL GTGSGSLIHI IWEEVGPDAA RKFLGYTQWL VNYWLLQNGF SIGIGDMIAD AATMADINKA
0701: ISGAKDCVKK LIKQARDEQL KAEPGHTMME SFENKVNEAL NKARDNVGSN VQNNLSESNN LKAMVSAGSK GSFINISQMA ACVGQQNIEG KRIPFGFSDR
0801: TLPHFTKDDY GPESRGFVEN SYLQGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VVQFIYGEDG MDAVWIEEQN
0901: LDSLKMKKEE FDTVFRYELD DENWRPNYLL PVHFDDLKTI SEFRSVLEAE VHKLEADRFQ LGTEIATNGS HTWPLPVNLK RLIWNAQKTF KIDIRTCSDM
1001: HPIEIVEAID KLQERLKVVP GDDAISIEAQ KNATLFFNIH LRATFASKRV LREYRLTREA FEWIIDEIVW RFSQSLVAPS EMIGCVAAQS IGEPATQMTL
1101: NTFHFAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVYLK PEVNKTKELA KSVQCALEYT TLRSVTHATE VWYDPDPMGT IIEEDLEFVL SYYEMPDEDI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA NEINREFDGD LSCIFSDDNA DKLILRLRII NDEASRGEIL DDSAGDEVFL KKIESNMLAE MSLRGIPDIN
1301: KVFIKEVKVN KFDVSDGFKE HKEWMLDTDG VNLLAVMCHE DVDATRTTSN HLTEVIEVLG IEAVRRALLD ELRSVISFDG SYVNYRHLAV LCDTMTYRGH
1401: LMAITRHGIN RNDTGPLMRC SFEETVDILL DAAVHAESDY LRGVTENIML GQLAPIGTGG CSLFLNDQML QQAIELQLPS YVDGLDFGIT SAPSPLSSPL
1501: SGSSYHEGLM SSSHLLSPDF RHSPIDTYAS FSPYVRDMSL SPVPSQGGYS PIPRSESGYS PIPRSVRYMA VSPIYTPYNA ASPVNASTST SYTPVSPVYS
1601: PTTPVYTPMS PVYSPTTPVS SQIQSYSSAS PIYNPISPNS SRYNPSSPSF SPTSTSPSYS PASASYSPTS PFYSPTSPSY SPASLSYSPT SPFYSPTSPS
1701: YSPASLSYSP TSPFYSPTSP SYSPSSPSYS PTSPTYSPTS LGYSPTSPGY SPTSPTYSPT SPNYSPTSPS YNLSYTEYNS SNTYSPTRPR ITLDSQAPDY
1801: SPTSPTYSPT SPSYSLPSLS YSPNSNLCRP TDDSGRPSPD YSPTSPNFSP NRSDSPTAAD YSPSSTGQAI EKDGETSH
0101: IMRCVCFNCS KILVDEDNTK FKQALKIRNP KNRLKRIYDA CKTKKVCGEG DDLDVQQQQD TDEHVNRRGG CGAQQPIITV DGVKMLVEFK APKKKNDDQE
0201: QLSELVEPKQ ILSAERVLNV LKNISDKESL LLGLHPKLAR PDWMILQVLP IPPPPVRPSV MMGTSSKSED DLTHQLAMII RHNENLRRQE RNGAPAHIIE
0301: EFSQLLQFHI ATYFDNELPG QPRATQRSGR PIKSICSRLK AKEGRVRGNL MGKRVDFSAR TVITPDPNIN IDEVGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVLNGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQSN KPVMGIVQDT LLGCRKITKR DTLIEKDVFM NILMWWEDFD GKIPAPAILK PRPIWTGKQV FNLIIPRQIN
0601: LIRFCSWHSD EEKGFVTPSD TVVRIEKGEL LSGTLCKKTL GTGSGSLIHI IWEEVGPDAA RKFLGYTQWL VNYWLLQNGF SIGIGDMIAD AATMADINKA
0701: ISGAKDCVKK LIKQARDEQL KAEPGHTMME SFENKVNEAL NKARDNVGSN VQNNLSESNN LKAMVSAGSK GSFINISQMA ACVGQQNIEG KRIPFGFSDR
0801: TLPHFTKDDY GPESRGFVEN SYLQGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VVQFIYGEDG MDAVWIEEQN
0901: LDSLKMKKEE FDTVFRYELD DENWRPNYLL PVHFDDLKTI SEFRSVLEAE VHKLEADRFQ LGTEIATNGS HTWPLPVNLK RLIWNAQKTF KIDIRTCSDM
1001: HPIEIVEAID KLQERLKVVP GDDAISIEAQ KNATLFFNIH LRATFASKRV LREYRLTREA FEWIIDEIVW RFSQSLVAPS EMIGCVAAQS IGEPATQMTL
1101: NTFHFAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVYLK PEVNKTKELA KSVQCALEYT TLRSVTHATE VWYDPDPMGT IIEEDLEFVL SYYEMPDEDI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA NEINREFDGD LSCIFSDDNA DKLILRLRII NDEASRGEIL DDSAGDEVFL KKIESNMLAE MSLRGIPDIN
1301: KVFIKEVKVN KFDVSDGFKE HKEWMLDTDG VNLLAVMCHE DVDATRTTSN HLTEVIEVLG IEAVRRALLD ELRSVISFDG SYVNYRHLAV LCDTMTYRGH
1401: LMAITRHGIN RNDTGPLMRC SFEETVDILL DAAVHAESDY LRGVTENIML GQLAPIGTGG CSLFLNDQML QQAIELQLPS YVDGLDFGIT SAPSPLSSPL
1501: SGSSYHEGLM SSSHLLSPDF RHSPIDTYAS FSPYVRDMSL SPVPSQGGYS PIPRSESGYS PIPRSVRYMA VSPIYTPYNA ASPVNASTST SYTPVSPVYS
1601: PTTPVYTPMS PVYSPTTPVS SQIQSYSSAS PIYNPISPNS SRYNPSSPSF SPTSTSPSYS PASASYSPTS PFYSPTSPSY SPASLSYSPT SPFYSPTSPS
1701: YSPASLSYSP TSPFYSPTSP SYSPSSPSYS PTSPTYSPTS LGYSPTSPGY SPTSPTYSPT SPNYSPTSPS YNLSYTEYNS SNTYSPTRPR ITLDSQAPDY
1801: SPTSPTYSPT SPSYSLPSLS YSPNSNLCRP TDDSGRPSPD YSPTSPNFSP NRSDSPTAAD YSPSSTGQAI EKDGETSH
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.