Factsheet for AT4G35800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010510.1-P	Field mustard	nucleus	96.52	97.31
CDY71816	Canola	cytosol	14.52	93.68
CDY08876	Canola	nucleus	81.78	92.9
VIT_18s0001g00860.t01	Wine grape	nucleus	88.91	88.28
KRH28855	Soybean	nucleus	87.49	88.07
KRH76591	Soybean	nucleus	87.38	87.96
GSMUA_Achr1P14900_001	Banana	nucleus	53.56	87.79
Solyc02g083350.2.1	Tomato	nucleus	87.49	87.16
PGSC0003DMT400009249	Potato	nucleus	87.0	87.0
KRH40807	Soybean	nucleus	82.54	85.67
GSMUA_Achr1P14890_001	Banana	cytosol	22.02	84.55
TraesCS7B01G202000.2	Wheat	nucleus	84.88	84.29
Zm00001d024583_P003	Maize	nucleus	84.56	84.05
HORVU5Hr1G114340.1	Barley	nucleus	39.48	84.03
TraesCS7D01G297100.1	Wheat	nucleus	84.88	83.97
TraesCS7A01G301900.1	Wheat	nucleus	84.88	83.97
EES13372	Sorghum	nucleus	84.67	83.84
TraesCS2D01G571500.1	Wheat	nucleus	83.58	82.95
TraesCS2B01G622300.1	Wheat	nucleus	83.47	82.57
TraesCS2A01G558100.1	Wheat	nucleus	83.41	82.56
TraesCS2D01G427500.2	Wheat	nucleus	65.2	81.51
TraesCS5D01G499000.1	Wheat	nucleus	80.91	81.31
HORVU2Hr1G126750.3	Barley	nucleus	83.58	81.19
TraesCS5B01G499000.1	Wheat	nucleus	79.88	80.85
HORVU5Hr1G114400.2	Barley	nucleus	77.98	80.52
GSMUA_Achr3P00590_001	Banana	nucleus	61.34	80.11
Solyc02g083230.2.1	Tomato	cytosol, nucleus, peroxisome	11.47	79.92
TraesCS7B01G085700.1	Wheat	cytosol	37.68	79.84
TraesCS7D01G182500.1	Wheat	cytosol	37.68	79.84
TraesCS5D01G498900.1	Wheat	nucleus	80.15	79.81
TraesCS7A01G180700.1	Wheat	cytosol	37.63	79.45
TraesCS5B01G498800.1	Wheat	nucleus	78.52	79.25
Os05t0151000-00	Rice	nucleus	77.05	76.93
EES08565	Sorghum	nucleus	78.03	76.41
HORVU7Hr1G037130.2	Barley	nucleus	37.41	75.6
Bra011638.1-P	Field mustard	nucleus	91.9	62.38
CDX69166	Canola	cytosol	89.12	62.08
CDX75527	Canola	nucleus	91.19	61.75
AT5G60040.2	Thale cress	cytosol	24.58	32.49
AT3G57660.1	Thale cress	nucleus	22.29	24.55
AT1G63020.2	Thale cress	cytosol, nucleus, plasma membrane	14.95	18.93
AT2G40030.1	Thale cress	nucleus	16.86	15.69

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.150.390	Gene3D:1.10.274.100	Gene3D:1.20.120.1280
MapMan:15.1.2.1	Gene3D:2.20.25.410	Gene3D:2.40.40.20	Gene3D:3.30.1360.140	Gene3D:3.30.1490.180	EntrezGene:829734
UniProt:A0A178UYS0	ProteinID:AEE86573.1	EMBL:AK221166	ProteinID:ANM67520.1	ArrayExpress:AT4G35800	EnsemblPlantsGene:AT4G35800
RefSeq:AT4G35800	TAIR:AT4G35800	RefSeq:AT4G35800-TAIR-G	EnsemblPlants:AT4G35800.1	TAIR:AT4G35800.1	Unigene:At.23499
ProteinID:CAA21466.2	ProteinID:CAA36735.1	ProteinID:CAA37130.1	ProteinID:CAB81489.1	ncoils:Coil	GO:GO:0001055
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006351	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0046872	InterPro:IPR038120	InterPro:IPR038593
RefSeq:NP_001329346.1	RefSeq:NP_195305.2	Symbol:NRPB1	ProteinID:OAO99139.1	UniProt:P18616	PFAM:PF00623
PFAM:PF04983	PFAM:PF04990	PFAM:PF04992	PFAM:PF04997	PFAM:PF04998	PFAM:PF05000
PFAM:PF05001	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR01217	ScanProsite:PS00115	PANTHER:PTHR19376	PANTHER:PTHR19376:SF37	InterPro:RNA_pol_II_repeat_euk	InterPro:RNA_pol_N
InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_Rpb1_4	InterPro:RNA_pol_Rpb1_5	InterPro:RNA_pol_Rpb1_6	InterPro:RNA_pol_Rpb1_7
InterPro:RNA_pol_Rpb1_7_sf	InterPro:RNA_pol_asu	InterPro:Rpb1_funnel_sf	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0001E92EEB
SEG:seg	:	:	:	:	:

Description

NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]

Coordinates

chr4:-:16960558..16968128

Molecular Weight (calculated)

204637.0 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.516

Length

1839 amino acids

Sequence
(BLAST)

0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.