Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | GSMUA_Achr10P... | AT1G49590.1 | 23524848 |
| AT4G35800.1 | GSMUA_Achr10P... | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 13.99 | 74.62 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 45.53 | 74.19 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 24.5 | 72.03 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 43.68 | 70.85 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 43.47 | 70.51 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 43.32 | 70.03 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 54.4 | 68.27 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 43.32 | 67.03 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 69.32 | 66.35 |
| Zm00001d024583_P003 | Maize | nucleus | 83.66 | 63.68 |
| KRH28855 | Soybean | nucleus | 82.53 | 63.6 |
| EES13372 | Sorghum | nucleus | 83.81 | 63.54 |
| KRH76591 | Soybean | nucleus | 82.32 | 63.44 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 83.24 | 63.28 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.53 | 63.19 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 83.24 | 63.04 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 83.24 | 63.04 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.6 | 63.0 |
| KRH40807 | Soybean | nucleus | 78.91 | 62.7 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 78.76 | 62.27 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 81.68 | 61.89 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 81.39 | 61.85 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 81.46 | 61.7 |
| Bra010510.1-P | Field mustard | nucleus | 79.83 | 61.62 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 79.26 | 61.42 |
| AT4G35800.1 | Thale cress | nucleus | 80.11 | 61.34 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 79.55 | 61.2 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 78.84 | 60.92 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 81.75 | 60.8 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 79.76 | 60.8 |
| Os05t0151000-00 | Rice | nucleus | 79.26 | 60.59 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.03 | 60.0 |
| EES08565 | Sorghum | nucleus | 78.48 | 58.84 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 16.34 | 58.52 |
| CDY71816 | Canola | cytosol | 11.72 | 57.89 |
| CDY08876 | Canola | nucleus | 66.34 | 57.69 |
| Bra011638.1-P | Field mustard | nucleus | 78.41 | 40.75 |
| CDX75527 | Canola | nucleus | 78.12 | 40.5 |
| CDX69166 | Canola | cytosol | 75.14 | 40.08 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 32.1 | 28.52 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 25.43 | 23.9 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 25.64 | 21.34 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 16.34 | 16.05 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 16.12 | 13.56 |
Protein Annotations
Description
DNA-directed RNA polymerase II subunit RPB1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00590_001]
Coordinates
chr3:-:462581..471006
Molecular Weight (calculated)
157388.0 Da
IEP (calculated)
6.562
GRAVY (calculated)
-0.441
Length
1408 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMRFPYSPA NVAKRHMSVV QIVHGATTER GKPKLGGLSD PRLGTVNRRM SCETCKGNMA ECPGHFGHLE LAKPMFHIGF LKTVLLITRC VCFNCSKILV
0101: DEEKKEIFSK IKIRYIDDPK FKEALKIRNP KNRLQRIYVA CKSKKKCSGG DDIGLRRQQD SRGPTEKSRV GKSDEQEDRL EPSERKQVLV LERISDEDCL
0201: LLGLDPKYAR PDWMILQVLP VPPPPVRPSV MMDSSLRSED DLTHQLAMII RHNENLRQQE RSGAPAHFIS ELAQVLQFHV ATYFDNELPG QPTATHRSGR
0301: PIKSICSRLK GKGGRIRGNL MGKRVNFSAR TVITPDPTIN IDELGVPWSI ASNLTYPETV TAYNIERLRE LVENGPHPPP GTPGANYIIR DDGQRLDLRY
0401: VKKSSDRHLE LGYKARVERH LRDGDYVLFN RQPSLHKMSI MGHRIKLMPH STFRLNLCVT TPYNADFDGD EMNMHVPQSL ETRAEVIELM MVPKCIVSPQ
0501: SNRPVMGIVQ DTLLGCRKIT ARDTFIEKDV FMNILMWWED FDGKIPAPAV LKPRPLWTGK QKGELLSGTL CRKTLGTSPG SLIHVIWEEV GPDAARKFLG
0601: HAQWLVNHWL LQNGFSMGIG DTIADAATME KINETISKAK NDVKELIKLA QEKQFEAEPG RTMMESFENR VNQVLNRARD DAGSSGQKSL SESNNLKAMV
0701: TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF GFVDRTLPHF TKDDYGPESR GFVENSYLRG LTPQEFFFHA MGGREGLVDT AVKTSETGYI QRRLVKAMED
0801: IVVTYDGTVR NSLGDVIQFL YGEDGIDAEH VEDLKTIPEC RDVFDAEVQK LEADRLIWNA QKTFKIDPRR PSDMHPMEIV DAVDKLQERL KVEYRLTREA
0901: FEWVIGEIES RFVQSLVSPG EMIGCVAAQS IGEPATQMTL NTFHYAGVSA KNVTLGVPRL REIINVAKQI KTPSLCVYLK PEVRHEKEKA KQVQCALEYT
1001: TLRSVTHATE IWYDPDPRST MMVDKKLAMA DIAEKIDDEF GEVQDESDED DVFMKKIESN MLTEMALRGI PEIKKWMLDT EGVNLLAVMC HEDVDATRTT
1101: SNHLVEVIEV LGIEAVRRAL LDELRAVISF DGSYVNYRHL AILCDTMTYR GHLMAITRHG INRNDTGPLM RCSFEETVEI LLDAAVYSEE DHLRGVTENI
1201: MLGQLTPVGT GACALYLNDR MLQQAIELPL PSYMMDGGGF DFGTTPSASP NYAWASYHEG MMSPVYTPTS PSYSPPSPSY SPSSPAYTPT SPSYNPPSPS
1301: YSPSSPVYTP TSPSYSPTSP SYTPSSPSYS PTSPRYSPIS PSYSPTSPKY GPSVACPRLS TSPSYSPASP SYSPSSPVFS PDSPSAVYSP SSPAYSTSSS
1401: DEDEESTG
0101: DEEKKEIFSK IKIRYIDDPK FKEALKIRNP KNRLQRIYVA CKSKKKCSGG DDIGLRRQQD SRGPTEKSRV GKSDEQEDRL EPSERKQVLV LERISDEDCL
0201: LLGLDPKYAR PDWMILQVLP VPPPPVRPSV MMDSSLRSED DLTHQLAMII RHNENLRQQE RSGAPAHFIS ELAQVLQFHV ATYFDNELPG QPTATHRSGR
0301: PIKSICSRLK GKGGRIRGNL MGKRVNFSAR TVITPDPTIN IDELGVPWSI ASNLTYPETV TAYNIERLRE LVENGPHPPP GTPGANYIIR DDGQRLDLRY
0401: VKKSSDRHLE LGYKARVERH LRDGDYVLFN RQPSLHKMSI MGHRIKLMPH STFRLNLCVT TPYNADFDGD EMNMHVPQSL ETRAEVIELM MVPKCIVSPQ
0501: SNRPVMGIVQ DTLLGCRKIT ARDTFIEKDV FMNILMWWED FDGKIPAPAV LKPRPLWTGK QKGELLSGTL CRKTLGTSPG SLIHVIWEEV GPDAARKFLG
0601: HAQWLVNHWL LQNGFSMGIG DTIADAATME KINETISKAK NDVKELIKLA QEKQFEAEPG RTMMESFENR VNQVLNRARD DAGSSGQKSL SESNNLKAMV
0701: TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF GFVDRTLPHF TKDDYGPESR GFVENSYLRG LTPQEFFFHA MGGREGLVDT AVKTSETGYI QRRLVKAMED
0801: IVVTYDGTVR NSLGDVIQFL YGEDGIDAEH VEDLKTIPEC RDVFDAEVQK LEADRLIWNA QKTFKIDPRR PSDMHPMEIV DAVDKLQERL KVEYRLTREA
0901: FEWVIGEIES RFVQSLVSPG EMIGCVAAQS IGEPATQMTL NTFHYAGVSA KNVTLGVPRL REIINVAKQI KTPSLCVYLK PEVRHEKEKA KQVQCALEYT
1001: TLRSVTHATE IWYDPDPRST MMVDKKLAMA DIAEKIDDEF GEVQDESDED DVFMKKIESN MLTEMALRGI PEIKKWMLDT EGVNLLAVMC HEDVDATRTT
1101: SNHLVEVIEV LGIEAVRRAL LDELRAVISF DGSYVNYRHL AILCDTMTYR GHLMAITRHG INRNDTGPLM RCSFEETVEI LLDAAVYSEE DHLRGVTENI
1201: MLGQLTPVGT GACALYLNDR MLQQAIELPL PSYMMDGGGF DFGTTPSASP NYAWASYHEG MMSPVYTPTS PSYSPPSPSY SPSSPAYTPT SPSYNPPSPS
1301: YSPSSPVYTP TSPSYSPTSP SYTPSSPSYS PTSPRYSPIS PSYSPTSPKY GPSVACPRLS TSPSYSPASP SYSPSSPVFS PDSPSAVYSP SSPAYSTSSS
1401: DEDEESTG
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.