Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 91.72 | 81.21 |
| Os06t0612200-01 | Rice | nucleus | 8.68 | 54.85 |
| Zm00001d029055_P010 | Maize | nucleus | 61.28 | 54.32 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 58.74 | 52.04 |
| KXG22455 | Sorghum | nucleus | 60.08 | 51.96 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 55.74 | 50.45 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 55.67 | 50.33 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 55.94 | 50.3 |
| KRH33046 | Soybean | nucleus | 54.67 | 49.61 |
| CDY06084 | Canola | nucleus | 50.2 | 49.44 |
| CDX72007 | Canola | nucleus | 50.2 | 48.99 |
| KRH71957 | Soybean | nucleus | 41.92 | 48.76 |
| CDY65464 | Canola | nucleus | 30.17 | 48.24 |
| CDY65462 | Canola | nucleus | 11.42 | 47.77 |
| Bra003294.1-P | Field mustard | nucleus | 50.07 | 47.47 |
| CDX67702 | Canola | nucleus | 47.8 | 47.45 |
| AT3G57660.1 | Thale cress | nucleus | 52.54 | 47.13 |
| Solyc10g080350.1.1 | Tomato | nucleus | 52.67 | 47.05 |
| Bra007345.1-P | Field mustard | nucleus | 51.27 | 46.83 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 54.74 | 46.12 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 23.9 | 25.43 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 7.94 | 24.84 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 23.97 | 22.65 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 15.62 | 20.86 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 13.42 | 14.03 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 13.82 | 12.37 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | InterPro:DNA-dir_RNA_pol1_lsu |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | EnsemblPlantsGene:GSMUA_Achr3G28430_001 | EnsemblPlants:GSMUA_Achr3P28430_001 | EnsemblPlants:GSMUA_Achr3T28430_001 | InterPro:IPR038120 | UniProt:M0SIK9 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000296CD83 | SEG:seg |
Description
Putative DNA-directed RNA polymerase I subunit RPA1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28430_001]
Coordinates
chr3:+:27707871..27728562
Molecular Weight (calculated)
168284.0 Da
IEP (calculated)
8.262
GRAVY (calculated)
-0.318
Length
1498 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMDQAASGVV KYVHFNFYTS EEIRKISVKK ITKPDLLDAK NSPIPDGLYD PALGPLNDND SCKSCGQLSV RCPGHCGHID LAKPLYNPLL FKTLQGLLQI
0101: TCFFCHKFKI NEEKVKRYVA QLDLIVKGDI NGARSLEANT WSEIFFPEEE TAESITSNFD NANSKHLTWT SLQQSEALSI FSKFMRERRK KCDNCGKKNP
0201: TINSPIFGWL NKTTQESDIR ANFILDSSLD QSSSEAKYSS ITQSRGESAS EMDEESPLSK KKVKLGDLPP EFIKQMSSSG QKHLLPSEVE FILNNLWKNE
0301: ANLCMLISDI HCKNLSISRG NKGFAMFFLK TLLIPPSKFR PAAGSSGRGV LEHPQNTLLS KVQQANIALK NCIVANPDHP DILRSWMDLQ KCVNVLFDST
0401: KGFAKSDKEA SGIRQLLEKK SGILRQKMMG KRVNFACRSV ISPDPYLAVN EIGIPPYFSL RLTYPERVTP WNVNKLRCAI INGADIHPGA THYKDKERMY
0501: KLQASQNMRS AISRKLPTSR GMTAQLGTGP ESEFEGKVVY RHLQDGDIVL VNRQPTLHKP SMMAHVVRVL KGEKTLRMHY ANCSTYNADF DGDEMNVHLP
0601: QDEISRAEAI NIVNANKQYI VPTSGHPIRG LIQDHIVSAV LLTKMDTFLT REEYHQLLYA SSIQPLPPAI WKPTPLWTGK QVVFPFRLLN MSPLLSKIIQ
0701: KEYIGEDHTL LVLHIHNNEL VHGMIDKAQF GTYGLVHAVH ELYGPDVAGT LLSVFSRLFT SFLQIHGFTC GVDDLLLSQK SDIERERILK KSEIQSGEVH
0801: MRFTRTKDGD GDPMKLQREI EKVLRGNGDS ATALLDRMMS NSLNSLTSEI NQTLFPNGLL KPFLKNCLSL MTTTGAKGGL VNMTQISSLL GQQELEGKRV
0901: PRMVSGKTLP CFPPWDISSR AGGFISDRFL TGLRPQEYYF HCMAGRDGLV DTAIKTSRSG YLQRCIIKNL ECLKVSYDHT VRDADGSVIQ FIYGEDGIDV
1001: LKASHISEFK MLLDNQKVVL QKFSDQISDT SLAKSNAYIR ELPCSLRDKA TDFILKNQKS FPHQINQKDF MKLMKLKYLS SLAEPGEAVG VVAAQSVGEP
1101: STQMTLNTFH LAGKGDMNVT LGIPRLQEIL MTASKDIRTP LMNCPLHVWK TKDDAERLAA KLRRVSLADV VERMEVCTVP FSIHGNQIST IYKLKMTLYP
1201: SELYPAFSEL TLEDCKEVLE TTFVEAMEDA IAKHLDMIFR IKNVDGGDED YETGEHDEEM QSGFESEIDH VEADEDYLMG GGNGKKKSKL TEKGKKETKS
1301: KADKKAKKPK SSKKKIRRTI YMMAEGLKFE VHYIFRSEPR ILLAEIAQRT AKRVYIAGVN FSTLWDLEEF LDIIHIYSND IHAMLNTYGV EAARATIIKE
1401: VTDVFGLYGI QVNIRHLSLI ADFMTFHGGY RPMNRVGMGD FNTSPFGKMT FETATKFIIE SAFHGEVDTL ESPSASVSLG QPVKMGTGCF DLMQNLQL
0101: TCFFCHKFKI NEEKVKRYVA QLDLIVKGDI NGARSLEANT WSEIFFPEEE TAESITSNFD NANSKHLTWT SLQQSEALSI FSKFMRERRK KCDNCGKKNP
0201: TINSPIFGWL NKTTQESDIR ANFILDSSLD QSSSEAKYSS ITQSRGESAS EMDEESPLSK KKVKLGDLPP EFIKQMSSSG QKHLLPSEVE FILNNLWKNE
0301: ANLCMLISDI HCKNLSISRG NKGFAMFFLK TLLIPPSKFR PAAGSSGRGV LEHPQNTLLS KVQQANIALK NCIVANPDHP DILRSWMDLQ KCVNVLFDST
0401: KGFAKSDKEA SGIRQLLEKK SGILRQKMMG KRVNFACRSV ISPDPYLAVN EIGIPPYFSL RLTYPERVTP WNVNKLRCAI INGADIHPGA THYKDKERMY
0501: KLQASQNMRS AISRKLPTSR GMTAQLGTGP ESEFEGKVVY RHLQDGDIVL VNRQPTLHKP SMMAHVVRVL KGEKTLRMHY ANCSTYNADF DGDEMNVHLP
0601: QDEISRAEAI NIVNANKQYI VPTSGHPIRG LIQDHIVSAV LLTKMDTFLT REEYHQLLYA SSIQPLPPAI WKPTPLWTGK QVVFPFRLLN MSPLLSKIIQ
0701: KEYIGEDHTL LVLHIHNNEL VHGMIDKAQF GTYGLVHAVH ELYGPDVAGT LLSVFSRLFT SFLQIHGFTC GVDDLLLSQK SDIERERILK KSEIQSGEVH
0801: MRFTRTKDGD GDPMKLQREI EKVLRGNGDS ATALLDRMMS NSLNSLTSEI NQTLFPNGLL KPFLKNCLSL MTTTGAKGGL VNMTQISSLL GQQELEGKRV
0901: PRMVSGKTLP CFPPWDISSR AGGFISDRFL TGLRPQEYYF HCMAGRDGLV DTAIKTSRSG YLQRCIIKNL ECLKVSYDHT VRDADGSVIQ FIYGEDGIDV
1001: LKASHISEFK MLLDNQKVVL QKFSDQISDT SLAKSNAYIR ELPCSLRDKA TDFILKNQKS FPHQINQKDF MKLMKLKYLS SLAEPGEAVG VVAAQSVGEP
1101: STQMTLNTFH LAGKGDMNVT LGIPRLQEIL MTASKDIRTP LMNCPLHVWK TKDDAERLAA KLRRVSLADV VERMEVCTVP FSIHGNQIST IYKLKMTLYP
1201: SELYPAFSEL TLEDCKEVLE TTFVEAMEDA IAKHLDMIFR IKNVDGGDED YETGEHDEEM QSGFESEIDH VEADEDYLMG GGNGKKKSKL TEKGKKETKS
1301: KADKKAKKPK SSKKKIRRTI YMMAEGLKFE VHYIFRSEPR ILLAEIAQRT AKRVYIAGVN FSTLWDLEEF LDIIHIYSND IHAMLNTYGV EAARATIIKE
1401: VTDVFGLYGI QVNIRHLSLI ADFMTFHGGY RPMNRVGMGD FNTSPFGKMT FETATKFIIE SAFHGEVDTL ESPSASVSLG QPVKMGTGCF DLMQNLQL
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.