Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 10.66 | 77.88 |
| Os04t0492300-01 | Rice | nucleus | 66.94 | 76.72 |
| EES11045 | Sorghum | nucleus | 66.31 | 75.56 |
| Zm00001d003203_P003 | Maize | cytosol | 66.18 | 75.25 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 10.79 | 75.0 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 65.43 | 74.34 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 65.36 | 74.27 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 65.3 | 74.19 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 65.49 | 72.84 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 32.87 | 72.66 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 32.68 | 72.04 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 63.47 | 71.96 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 30.6 | 69.99 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 33.56 | 69.72 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 14.13 | 67.67 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 44.86 | 66.26 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 6.18 | 66.22 |
| Solyc11g072730.1.1 | Tomato | nucleus | 56.53 | 64.46 |
| KRG88695 | Soybean | nucleus | 54.51 | 62.11 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 6.31 | 62.11 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 5.74 | 61.49 |
| Bra020267.1-P | Field mustard | nucleus | 52.93 | 61.24 |
| CDY09230 | Canola | nucleus | 52.93 | 61.24 |
| AT5G60040.2 | Thale cress | cytosol | 53.69 | 61.18 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 28.52 | 32.1 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 9.27 | 30.69 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 18.36 | 25.94 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 22.65 | 23.97 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.15 | 21.69 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 13.31 | 14.72 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 13.56 | 12.84 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| EnsemblPlantsGene:GSMUA_Achr5G29280_001 | EnsemblPlants:GSMUA_Achr5P29280_001 | EnsemblPlants:GSMUA_Achr5T29280_001 | InterPro:IPR038120 | UniProt:M0T2Q2 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 |
| InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0002959335 |
| SEG:seg | : | : | : | : | : |
Description
Putative DNA-directed RNA polymerase III subunit rpc1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29280_001]
Coordinates
chr5:-:29064687..29088423
Molecular Weight (calculated)
177239.0 Da
IEP (calculated)
9.412
GRAVY (calculated)
-0.157
Length
1585 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPPREEKLRC TKEPYIEDVG PQRIKSIRFS TFSGEEIKKL AEVQVWNNRI YGIDLRPVEN GLLDPKMGAA NKAGVCATCH GNFTECPGHF GYLKLTLPVF
0101: NVGFFNSILN VLKCICKACA RILLLENDRR IFLKKMRNPK ADIFMKNALM KKIRDKCKIS ICPWCGSRNG VVKKARSSFA IAHDFSRSVD ESIEVVRAAL
0201: SHIKAKSSFQ IVHVLSPVTV LSLFKRMVDE DCELLNLYDR PDKLIVTTIA VPPVAVRPSV FVDFGKSSNE DSITTILKNI INTNSILRED LEGAAPPFKC
0301: LVRDCWAHLQ IQVVEYINSE APSVPDSKHR GLIQRLKGKQ GRFRGNLSGK RVEFTGRTVI SPDPNLKITE VAIPVLMAKK LTYPERVSAY NIEKLRQRIC
0401: NGPDKYPGAN FILLGDGTKQ HLRYVDKKTA ASELKYGYIV ERHLEDGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF DGDEMNLHVP
0501: QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLMCSY MGDSMDPIDL PSPAIIKARL GDQGSSYENN LIIFRPIELW
0601: TGKQLFSVLI RPNARTKVFL NLMVKEKIYT KSETMCPSDG YVYFRNSELI CGQLGKVTLE RKKMSAGHLC ADNGQWDVGV TVMSKQTAGL ITIGLFFFTW
0701: ILMRSGVGGR GGRGDMRRWR MIQIEIKGER ETEELAEKKS KGNNKKRKIT IKNKKRMVGI MCNMLFVEGN GNKDGLFSVL LRDYNSHAAA SCMNRLAKLS
0801: ARWIGNHGFS IGIDDVQPGE HLNQQKKKKI DEGYRECHEL ISLYGKGKLT LQPGCNAAQT LELKITGVLN QIRAIAGNVC MNELHWRNSP LIMSQCGSKG
0901: SPINISQMVS CVGQQSVGGR RAPNGFIDRT LPHFPINSKT PAAKGFVANS FYTGLTATEF FFHTMGGREG LVDTAVKTAE TGYMSRRLMK GLEDLSIYYD
1001: ETVRNASGGI VQFLYGDDGM DPAKMEGKDG IPLNMDQLFM KVMVSIATCP PREHDMLSPT EALRIMDDRL AKYDMSPEGG CSAAFKKLLS DFVHKRVSAL
1101: ANMRKSLKLD ETDMGRKDST VLENVAAKIS GISSKQLELS IFILLPCHQH CNLCAMLYNV IEFLVSCTSS LYNYDVSTAY KYSNNIACML MMFVEMRSWF
1201: RRSYSSNIVF LETCISRYHS KKVEAGAAIG AIGAQSIGEP GTQMTLKTFH FAGVASMNVT LGVPRIKEII NASKNISTPI VTATLLNGRD VLSARVVKSC
1301: IEKTVLGEVA KALKIVLKSS RPYIVVKLDM DLIEALHMRV SAESVCHSIL NHPKIKLKSE HINNIGSDKL KIYPPEADRR KLQFEMHSLK AMLPKVIVKG
1401: IPTVERAVIN ETNGVYNLLV EGLLTFLDFF ECSTNLLAVM GTPGIDASKT RSNHVIEVQR TLGIEAARQC IINEIQYTMR GHGMSIDTRH MMLLADLMTY
1501: KGEVLGITRF GISKMKESVL MLASFEKTAE HLFNASYGGR DDQIEGVSEC IIMGIPMQLG TGILKVRQRV EKLPELKYAP DPIIS
0101: NVGFFNSILN VLKCICKACA RILLLENDRR IFLKKMRNPK ADIFMKNALM KKIRDKCKIS ICPWCGSRNG VVKKARSSFA IAHDFSRSVD ESIEVVRAAL
0201: SHIKAKSSFQ IVHVLSPVTV LSLFKRMVDE DCELLNLYDR PDKLIVTTIA VPPVAVRPSV FVDFGKSSNE DSITTILKNI INTNSILRED LEGAAPPFKC
0301: LVRDCWAHLQ IQVVEYINSE APSVPDSKHR GLIQRLKGKQ GRFRGNLSGK RVEFTGRTVI SPDPNLKITE VAIPVLMAKK LTYPERVSAY NIEKLRQRIC
0401: NGPDKYPGAN FILLGDGTKQ HLRYVDKKTA ASELKYGYIV ERHLEDGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF DGDEMNLHVP
0501: QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLMCSY MGDSMDPIDL PSPAIIKARL GDQGSSYENN LIIFRPIELW
0601: TGKQLFSVLI RPNARTKVFL NLMVKEKIYT KSETMCPSDG YVYFRNSELI CGQLGKVTLE RKKMSAGHLC ADNGQWDVGV TVMSKQTAGL ITIGLFFFTW
0701: ILMRSGVGGR GGRGDMRRWR MIQIEIKGER ETEELAEKKS KGNNKKRKIT IKNKKRMVGI MCNMLFVEGN GNKDGLFSVL LRDYNSHAAA SCMNRLAKLS
0801: ARWIGNHGFS IGIDDVQPGE HLNQQKKKKI DEGYRECHEL ISLYGKGKLT LQPGCNAAQT LELKITGVLN QIRAIAGNVC MNELHWRNSP LIMSQCGSKG
0901: SPINISQMVS CVGQQSVGGR RAPNGFIDRT LPHFPINSKT PAAKGFVANS FYTGLTATEF FFHTMGGREG LVDTAVKTAE TGYMSRRLMK GLEDLSIYYD
1001: ETVRNASGGI VQFLYGDDGM DPAKMEGKDG IPLNMDQLFM KVMVSIATCP PREHDMLSPT EALRIMDDRL AKYDMSPEGG CSAAFKKLLS DFVHKRVSAL
1101: ANMRKSLKLD ETDMGRKDST VLENVAAKIS GISSKQLELS IFILLPCHQH CNLCAMLYNV IEFLVSCTSS LYNYDVSTAY KYSNNIACML MMFVEMRSWF
1201: RRSYSSNIVF LETCISRYHS KKVEAGAAIG AIGAQSIGEP GTQMTLKTFH FAGVASMNVT LGVPRIKEII NASKNISTPI VTATLLNGRD VLSARVVKSC
1301: IEKTVLGEVA KALKIVLKSS RPYIVVKLDM DLIEALHMRV SAESVCHSIL NHPKIKLKSE HINNIGSDKL KIYPPEADRR KLQFEMHSLK AMLPKVIVKG
1401: IPTVERAVIN ETNGVYNLLV EGLLTFLDFF ECSTNLLAVM GTPGIDASKT RSNHVIEVQR TLGIEAARQC IINEIQYTMR GHGMSIDTRH MMLLADLMTY
1501: KGEVLGITRF GISKMKESVL MLASFEKTAE HLFNASYGGR DDQIEGVSEC IIMGIPMQLG TGILKVRQRV EKLPELKYAP DPIIS
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.