Factsheet for VIT_06s0004g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G115900.3	Wheat	mitochondrion	60.73	27.96
TraesCS1A01G114600.1	Wheat	mitochondrion	60.42	27.89
VIT_00s0264g00080.t01	Wine grape	cytosol	12.39	24.85
Solyc11g072730.1.1	Tomato	nucleus	70.69	16.83
Os04t0492300-01	Rice	nucleus	66.16	15.84
Zm00001d003203_P003	Maize	cytosol	65.56	15.57
EES11045	Sorghum	nucleus	64.95	15.46
TraesCS3D01G448000.1	Wheat	nucleus	64.05	15.2
TraesCS3B01G494500.1	Wheat	nucleus	64.05	15.2
TraesCS3A01G455500.1	Wheat	nucleus	64.05	15.2
HORVU6Hr1G027050.1	Barley	nucleus	64.05	14.88
TraesCS1B01G134500.1	Wheat	cytosol	61.63	14.59
GSMUA_Achr5P29280_001	Banana	nucleus	67.67	14.13
HORVU6Hr1G082430.1	Barley	cytosol	3.32	6.83
VIT_18s0001g00860.t01	Wine grape	nucleus	32.63	5.83
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	25.68	5.03
HORVU3Hr1G013150.1	Barley	nucleus	1.81	4.05
HORVU1Hr1G040070.1	Barley	mitochondrion	1.81	4.05
VIT_02s0025g04530.t01	Wine grape	nucleus	14.8	3.42
VIT_13s0067g03120.t01	Wine grape	nucleus	4.83	1.61
HORVU5Hr1G082550.1	Barley	cytosol, nucleus	0.6	0.92
HORVU7Hr1G011970.1	Barley	mitochondrion, nucleus	0.6	0.88
VIT_06s0004g03740.t01	Wine grape	nucleus	2.72	0.84
HORVU1Hr1G025160.5	Barley	cytosol	0.6	0.26
VIT_00s0264g00070.t01	Wine grape	nucleus	0.3	0.25
TraesCS1A01G114500.1	Wheat	nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.390	MapMan:35.1	ProteinID:CCB43624	ProteinID:CCB43624.1
UniProt:F6GTW0	EMBL:FN594951	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0006139	GO:GO:0006351	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	PFAM:PF04998
PANTHER:PTHR19376	PANTHER:PTHR19376:SF32	InterPro:RNAP_III_Rpc1_C	InterPro:RNA_pol_Rpb1_5	SUPFAM:SSF64484	UniParc:UPI000210A2F2
ArrayExpress:VIT_06s0004g03730	EnsemblPlantsGene:VIT_06s0004g03730	EnsemblPlants:VIT_06s0004g03730.t01	:	:	:

Description

No Description!

Coordinates

chr6:-:4680671..4687232

Molecular Weight (calculated)

36523.4 Da

IEP (calculated)

10.190

GRAVY (calculated)

0.067

Length

331 amino acids

Sequence
(BLAST)

001: MTLKTFHFAG VASMNVTLGV PRIKEIINGA KRISTPIITA ALECNNNVKT ARMVKGRIER TTLGQVAKSI KIVLTSRLAL IAVALDMEGI QASQLSIDSN
101: IVRESILRNR RIKLKQQHIK VLDAGKLEVH PQGDRSTIHF ELHALKNLLP TVVVKGIETV ERAVINKDNK VKYNLLVEGT GLQTVMGTEG VIGRETTSNH
201: IIEVQQTLGI EAARKCIINE IQYTMASHGM SIDIRHMMLL ADLMTFRGEV LGITRFGIQK MDKSVLMLAS FEKTADHLFN ASVSGRDDKI EGVSECIIMG
301: IPMQLGTGIL KVRQRLQQVP ELSYGLDPII S

Best Arabidopsis Sequence Match ( AT5G60040.1 )
(BLAST)

0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS

Arabidopsis Description

NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.