Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27976 | Soybean | nucleus | 59.25 | 58.39 |
| KRH77477 | Soybean | nucleus | 58.55 | 57.58 |
| Solyc08g080210.2.1 | Tomato | nucleus | 46.48 | 55.22 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 52.48 | 51.76 |
| CDX93859 | Canola | nucleus | 51.92 | 51.42 |
| CDY32191 | Canola | nucleus | 51.71 | 51.32 |
| CDY50743 | Canola | nucleus | 28.89 | 50.74 |
| Bra027611.1-P | Field mustard | nucleus | 51.08 | 50.73 |
| CDY49206 | Canola | nucleus | 51.43 | 50.48 |
| CDY68589 | Canola | cytosol | 17.24 | 46.34 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 15.14 | 45.4 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.61 | 44.59 |
| Zm00001d031457_P009 | Maize | nucleus | 33.29 | 43.84 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 41.94 | 42.18 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 41.73 | 41.96 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 42.99 | 41.51 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 41.1 | 41.28 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 41.45 | 39.65 |
| Os09t0555200-01 | Rice | cytosol | 8.51 | 38.36 |
| Os04t0572600-01 | Rice | cytosol | 11.44 | 36.36 |
| Zm00001d031459_P001 | Maize | cytosol | 8.16 | 35.24 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 39.99 | 34.23 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 16.89 | 24.3 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 5.65 | 20.61 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 12.84 | 17.15 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 1.81 | 15.76 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 3.42 | 14.8 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 19.05 | 14.74 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 16.89 | 14.31 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | EntrezGene:100254724 |
| wikigene:100254724 | MapMan:15.1.4.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | ProteinID:CCB58406 |
| ProteinID:CCB58406.1 | UniProt:F6HUI3 | EMBL:FN596251 | GO:GO:0000418 | GO:GO:0001056 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0010495 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 |
| InterPro:IPR038120 | EntrezGene:LOC100254724 | wikigene:LOC100254724 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf |
| SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI00021085E8 | ArrayExpress:VIT_02s0025g04530 | EnsemblPlantsGene:VIT_02s0025g04530 | EnsemblPlants:VIT_02s0025g04530.t01 |
| RefSeq:XP_002275898 | RefSeq:XP_002275898.2 | SEG:seg | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6HUI3]
Coordinates
chr2:+:4039818..4081274
Molecular Weight (calculated)
160814.0 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.176
Length
1433 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDNDFLEEQQ VPSGLLIGIK FDVSTEEDME KISVMKIDAV NEITDPKLGV PNPSCQCSTC GAKDTKKCEG HFGVIKFPFT ILHPYFLTEV VQILNKICPG
0101: CKSTRQGQWV KVRRLRSKGC KYCAANSNDW YPTMKFKVSS KDLFRKTAII VEMNEKLPKK LQKKSFRPVL PLDYWDFIPK DPQQEENCLN PNRRVLSHAQ
0201: VHYLLKDIDP GFIKEFVSRM DSFFLNCLPV TPNNHRVTEI THALSNGQTL IFDQHSRAYK KLVDFRGTAN ELSCHSASKM SGLKWIKEVL LGKRTNHSFR
0301: MIVVGDPKLR LSEIGIPCHI AEELLISEHL NSWNWEKVTN GCNLRLLEKG QTYVRRKGTL APVRRMNDFQ AGDIIYRPLT DGDIVLINRP PSIHQHSVIA
0401: LSVKVLPLNS VVSINPLCCS PFRGDFDGDC LHGYIPQSVD SRVELSELVA LNRQLINRQS GRNLLSLSQD SLSAAHLVME DGVLLNLFQM QQLEMFCPYQ
0501: LQSPAIIKAP LLDTQVWTGK QLFSMLLPPG FNYVFPLNGV RISDGELISS SDGSAWLRDI DGNLFSSLVK DCQGKALDFL YAAQEVLCEW LSMRGLSVSL
0601: SDIYLSSDSI SRKNMIDEVF CGLLVAEQTC HFKQLLVDSS QNFLIGSGEN NQNGVVPDVQ SLWYERQGSA ALCQSSVCAF KQKFRDIQNL VYQYANKDNS
0701: LLAMLKAGSK GNLLKLVQQG LCLGLQHSLV PLSFKIPHQL SCAAWNKQKV PGLIQNDTSE YAESYIPYAV VENSFLMGLN PLECFVHSVT SRDSSFSDNA
0801: DLPGTLTRRL MFFMRDLYIA YDGTVRNAYG NQLVQFSYNI EHTSTPSDGI NEDTCAYDMG GQPVGSISAC AISEAAYSAL DQPISLLEPS PLLNLKRVLE
0901: CGLRKSTADR TVSLFLSKKL EKRKHGFEYG ALEVKNHLEK LLFSDIVSTV MIVFSPQNGS KTHFSPWVCH FHVCEEIAKK RSLKPHSIID ALYMKCNSAR
1001: AESKINLPDL QITSKDCFVD MEKEDSDCFC ITVSIVNSKK SCIQLDTVRD LVIPFLLGAV VKGCCIKNSD VLKSSSGRLY LRVYVSGDCG KKNFWGVLMD
1101: ACLQIMDMID WERSHPDNIH DIFVVYGIDA GWKYFLNSLK SAISDIGKTV LPEHLLLVAS CLSATGEFVG LNAKGMARQK ELTSISSPFM QGCFSSPGSC
1201: FIKAGKRAVA DNLHGSLDAL AWGKIPSVGS GGHFDILYSA KGHELARPED IYKLLGSQTS CHEQNLKVKV PITCYQTTTK CGAQLVYANG DSASKGCKSL
1301: EKISKSVLRS FLSLNDIQKL SRRLKFILQK YPINHQLSEI DKTTLMMALY FHPRRDEKIG PGAQNIKVRY HSKYHNTRCF SLVRTDGTEE DFSYHKCVHG
1401: ALEIIDPRRA RSYQSRWLPY SEVLNLYRTL INR
0101: CKSTRQGQWV KVRRLRSKGC KYCAANSNDW YPTMKFKVSS KDLFRKTAII VEMNEKLPKK LQKKSFRPVL PLDYWDFIPK DPQQEENCLN PNRRVLSHAQ
0201: VHYLLKDIDP GFIKEFVSRM DSFFLNCLPV TPNNHRVTEI THALSNGQTL IFDQHSRAYK KLVDFRGTAN ELSCHSASKM SGLKWIKEVL LGKRTNHSFR
0301: MIVVGDPKLR LSEIGIPCHI AEELLISEHL NSWNWEKVTN GCNLRLLEKG QTYVRRKGTL APVRRMNDFQ AGDIIYRPLT DGDIVLINRP PSIHQHSVIA
0401: LSVKVLPLNS VVSINPLCCS PFRGDFDGDC LHGYIPQSVD SRVELSELVA LNRQLINRQS GRNLLSLSQD SLSAAHLVME DGVLLNLFQM QQLEMFCPYQ
0501: LQSPAIIKAP LLDTQVWTGK QLFSMLLPPG FNYVFPLNGV RISDGELISS SDGSAWLRDI DGNLFSSLVK DCQGKALDFL YAAQEVLCEW LSMRGLSVSL
0601: SDIYLSSDSI SRKNMIDEVF CGLLVAEQTC HFKQLLVDSS QNFLIGSGEN NQNGVVPDVQ SLWYERQGSA ALCQSSVCAF KQKFRDIQNL VYQYANKDNS
0701: LLAMLKAGSK GNLLKLVQQG LCLGLQHSLV PLSFKIPHQL SCAAWNKQKV PGLIQNDTSE YAESYIPYAV VENSFLMGLN PLECFVHSVT SRDSSFSDNA
0801: DLPGTLTRRL MFFMRDLYIA YDGTVRNAYG NQLVQFSYNI EHTSTPSDGI NEDTCAYDMG GQPVGSISAC AISEAAYSAL DQPISLLEPS PLLNLKRVLE
0901: CGLRKSTADR TVSLFLSKKL EKRKHGFEYG ALEVKNHLEK LLFSDIVSTV MIVFSPQNGS KTHFSPWVCH FHVCEEIAKK RSLKPHSIID ALYMKCNSAR
1001: AESKINLPDL QITSKDCFVD MEKEDSDCFC ITVSIVNSKK SCIQLDTVRD LVIPFLLGAV VKGCCIKNSD VLKSSSGRLY LRVYVSGDCG KKNFWGVLMD
1101: ACLQIMDMID WERSHPDNIH DIFVVYGIDA GWKYFLNSLK SAISDIGKTV LPEHLLLVAS CLSATGEFVG LNAKGMARQK ELTSISSPFM QGCFSSPGSC
1201: FIKAGKRAVA DNLHGSLDAL AWGKIPSVGS GGHFDILYSA KGHELARPED IYKLLGSQTS CHEQNLKVKV PITCYQTTTK CGAQLVYANG DSASKGCKSL
1301: EKISKSVLRS FLSLNDIQKL SRRLKFILQK YPINHQLSEI DKTTLMMALY FHPRRDEKIG PGAQNIKVRY HSKYHNTRCF SLVRTDGTEE DFSYHKCVHG
1401: ALEIIDPRRA RSYQSRWLPY SEVLNLYRTL INR
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.