Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49206 | Canola | nucleus | 96.2 | 53.77 |
| CDX93859 | Canola | nucleus | 87.99 | 49.62 |
| CDY32191 | Canola | nucleus | 87.5 | 49.45 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 80.39 | 45.15 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 50.74 | 28.89 |
| Zm00001d031457_P009 | Maize | nucleus | 37.5 | 28.12 |
| KRH27976 | Soybean | nucleus | 49.14 | 27.58 |
| KRH77477 | Soybean | nucleus | 48.53 | 27.18 |
| Solyc08g080210.2.1 | Tomato | nucleus | 34.19 | 23.13 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 37.75 | 20.75 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 36.03 | 20.63 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 35.78 | 20.49 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 35.42 | 20.25 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 35.91 | 19.56 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 32.48 | 15.83 |
| CDY65462 | Canola | nucleus | 6.74 | 15.36 |
| CDY71816 | Canola | cytosol | 4.9 | 14.04 |
| CDY09230 | Canola | nucleus | 22.06 | 13.14 |
| CDX67702 | Canola | nucleus | 19.61 | 10.6 |
| CDY06084 | Canola | nucleus | 19.73 | 10.59 |
| CDX72007 | Canola | nucleus | 19.85 | 10.55 |
| CDY60335 | Canola | nucleus | 21.57 | 9.42 |
| CDY65464 | Canola | nucleus | 9.56 | 8.32 |
| CDY08876 | Canola | nucleus | 15.56 | 7.84 |
| CDY07630 | Canola | nucleus | 21.45 | 7.64 |
| CDX69166 | Canola | cytosol | 21.32 | 6.59 |
| CDX75527 | Canola | nucleus | 20.96 | 6.3 |
| CDY68589 | Canola | cytosol | 0.37 | 0.56 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 0.0 | 0.0 |
| Os04t0572600-01 | Rice | cytosol | 0.0 | 0.0 |
| Os09t0555200-01 | Rice | cytosol | 0.0 | 0.0 |
| Zm00001d031459_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | GO:A0A078INR9 | UniProt:A0A078INR9 | EnsemblPlants:CDY50743 | ProteinID:CDY50743 |
| ProteinID:CDY50743.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlantsGene:GSBRNA2T00097426001 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | UniParc:UPI0004EEDCDF | SEG:seg | : | : | : |
Description
BnaC09g51200DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078INR9]
Coordinates
chrLK032936:+:79639..82723
Molecular Weight (calculated)
91597.8 Da
IEP (calculated)
7.970
GRAVY (calculated)
-0.370
Length
816 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKCEELQV PIGTLKSISF SISNNKDLKN MSAMEVEAAN QVTDSRLGLP NRDDICKSCG SKDRKVCEGH FGVINLRYPV INPHLLKEVA TLLNKFCPGC
101: KYTKKKQSQS QSQNPEDRPD RCRYCISNTD YPLMKFRVTT KEAFRRSGIV CEVSEDNLVK LSKRGLSALP PDYWEFMPKD PNIDESCLKP SRRILTHAQV
201: YALLSGIDER VIRKDIPMFD SLPLASFPVT PNGHRVSEMV TQFTGPRLVF DERTRIYKKL VGFEGNGLEL SSRVMECIQY SRLFSENVSP SQESANPYQK
301: KSDTPKLCGL RFMKDVLLGK RSDHTFRTVV VGDPSLKLNE IGIPRRIAER LQVSENLNDW NRERLVTSCF HKLLEKGETH VRRGGRLVGI RAIDDLQTGD
401: SILRTLKDGD TVLMNRPPSI HQHSLIAMSV KVLPTTSVVS LNPICCLPFR GDFDGDCLHG YVPQSIQAKA ELDELVALNK QLVNRQNGRN LLSLGQDSLT
501: AAYLVNVETN CFLNRAQVQQ LQMYCPYELP PPAIIRGSRS EPQWTGKQLF GMLFPPGFEY SYPLNNVVVT NGELLSSSDG SGWLRDGEGN FIQGLMKHDK
601: EKVLDIIYSA QEMLSQWLLN RGLSVSLSDL YFASDTQSRR NLTEEISYGL QEAEQVCNKQ QLMVESRRDF LAVNGEDMVV ADDLELFCYE RQRSATLSKL
701: AVSAFKDAYR DVQALAYRYG DQSNAFLVMS KAGSKGNMGK LAQHSMCIGL QNSSVALSFG FPRKLTCASW NDPNSPLRGA KGEDRTAHDS FVPFGVVESS
801: FLTGLNPLES FVLGKL
101: KYTKKKQSQS QSQNPEDRPD RCRYCISNTD YPLMKFRVTT KEAFRRSGIV CEVSEDNLVK LSKRGLSALP PDYWEFMPKD PNIDESCLKP SRRILTHAQV
201: YALLSGIDER VIRKDIPMFD SLPLASFPVT PNGHRVSEMV TQFTGPRLVF DERTRIYKKL VGFEGNGLEL SSRVMECIQY SRLFSENVSP SQESANPYQK
301: KSDTPKLCGL RFMKDVLLGK RSDHTFRTVV VGDPSLKLNE IGIPRRIAER LQVSENLNDW NRERLVTSCF HKLLEKGETH VRRGGRLVGI RAIDDLQTGD
401: SILRTLKDGD TVLMNRPPSI HQHSLIAMSV KVLPTTSVVS LNPICCLPFR GDFDGDCLHG YVPQSIQAKA ELDELVALNK QLVNRQNGRN LLSLGQDSLT
501: AAYLVNVETN CFLNRAQVQQ LQMYCPYELP PPAIIRGSRS EPQWTGKQLF GMLFPPGFEY SYPLNNVVVT NGELLSSSDG SGWLRDGEGN FIQGLMKHDK
601: EKVLDIIYSA QEMLSQWLLN RGLSVSLSDL YFASDTQSRR NLTEEISYGL QEAEQVCNKQ QLMVESRRDF LAVNGEDMVV ADDLELFCYE RQRSATLSKL
701: AVSAFKDAYR DVQALAYRYG DQSNAFLVMS KAGSKGNMGK LAQHSMCIGL QNSSVALSFG FPRKLTCASW NDPNSPLRGA KGEDRTAHDS FVPFGVVESS
801: FLTGLNPLES FVLGKL
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.