Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32191 | Canola | nucleus | 96.41 | 96.61 |
| CDY68589 | Canola | cytosol | 33.38 | 90.62 |
| CDY49206 | Canola | nucleus | 89.84 | 89.04 |
| CDY50743 | Canola | nucleus | 49.62 | 87.99 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 80.58 | 80.25 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 51.42 | 51.92 |
| KRH27976 | Soybean | nucleus | 49.0 | 48.76 |
| KRH77477 | Soybean | nucleus | 48.38 | 48.04 |
| Solyc08g080210.2.1 | Tomato | nucleus | 39.05 | 46.85 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.15 | 40.54 |
| Zm00001d031457_P009 | Maize | nucleus | 28.33 | 37.68 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 36.63 | 37.19 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 36.56 | 37.12 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 37.94 | 36.99 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 36.01 | 36.51 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 36.28 | 35.05 |
| Os09t0555200-01 | Rice | cytosol | 7.53 | 34.28 |
| Os04t0572600-01 | Rice | cytosol | 10.09 | 32.37 |
| Zm00001d031459_P001 | Maize | cytosol | 7.33 | 31.93 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 35.45 | 30.65 |
| CDY09230 | Canola | nucleus | 18.73 | 19.78 |
| CDY60335 | Canola | nucleus | 22.53 | 17.44 |
| CDY65462 | Canola | nucleus | 3.87 | 15.64 |
| CDX67702 | Canola | nucleus | 15.83 | 15.18 |
| CDY06084 | Canola | nucleus | 15.89 | 15.12 |
| CDX72007 | Canola | nucleus | 16.03 | 15.11 |
| CDY65464 | Canola | nucleus | 9.68 | 14.94 |
| CDY71816 | Canola | cytosol | 2.9 | 14.74 |
| CDY08876 | Canola | nucleus | 15.76 | 14.08 |
| CDX69166 | Canola | cytosol | 19.07 | 10.45 |
| CDX75527 | Canola | nucleus | 19.14 | 10.2 |
| CDY07630 | Canola | nucleus | 15.83 | 9.99 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:A0A078DZJ7 | EnsemblPlants:CDX93859 | ProteinID:CDX93859 |
| ProteinID:CDX93859.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00156655001 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf |
| SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EAC44F | SEG:seg | : | : |
Description
BnaC04g20180D
Coordinates
chrLK031878:-:63534..70577
Molecular Weight (calculated)
162385.0 Da
IEP (calculated)
7.660
GRAVY (calculated)
-0.313
Length
1447 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEECEELQV PMGTLKSIRF SISNNKDRKN MAVMDVEAAN QVTDSRLGLP NPDSICRSCG SKDRKVCEGH FGVINLKYPV INPYFLKEIA TLLNKICPGC
0101: KYMRKKQSQS TEDWPERCRY CTSNTGYPLM KFRVTTKEVF RRSGIVCEVS DDNLFKLSKR GLSSLPPDYW EFLPKDSNID ESCLKPSRRI LTHAQVYALL
0201: CGIDERLIRK DIPMFDSLPL TSFPVTPNGH RVSEMVNQFT GARLVFDERT RIYKKLVGFE GNGLELSARV IECMQYSRLF SENMSPSQES ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP RRIAERLQVS ENLNDWNRER LVTSCFHKLL ERGETHVRRG GSLVAIRVID DLQTGDSILR
0401: TLKDGDTVLM NRPPSIHQHS LIAMSVKVLP TTSVVSLNPI CCLPFRGDFD GDCFHGYVPQ SIQAKVELDE LVALDKQLVN RQNGRNLLSL GQDSLTAAYL
0501: VNVETNCFLN RAQMQQLQMY CPFELPPPAI IKASSSEPQW TGMQIFGMLL PPGFEYTCPL NDVVVSSGEL LSSSDGSAWL RDGEGNFIQG LLKEHKEKVL
0601: DIMYSTQEMF SQELQMRGLS VSLTDLYLAS DPESRRNLTE EISYGLQEAE QVCNKQQLMV ESRRDFLAGN VEDLSADFDR FCYERQRSAT LSKLAVSAFK
0701: DAYRDVQSLA YRYGDHSNSF LIMSKAGSKG NIGKLAQHSM CVGLQNSSVA LSFGFPRKLT CASWNDPNSP LRGAKREDQT GHESFVPFGV IENSFLTGLN
0801: PLESFVHSVT SRDSSFSGNA DIPGALNRKL MFFMRDIYAA YDGTVRNSFG NHLVQFRYET DDAEEDMAGE AVGSLSACAL TEAAYSALDQ PISLLETSPL
0901: LNLKNVLECG SKKGLKEQTM SLYLSETLSK KKHGFEYGAL DIKSHLEKLS FSEIVSTSMI IFSPRTNTKM PMSSWVCHFH ISKKVLKQKQ LDVGSVVSSL
1001: NKQYANRKKE LKLDVIDLEI QSTNHCSWDD KSMEDDRFCI TVTVLETSTH GSLELDAIRL VLIPFLLDSP VKGYREIKKV EILWVDRPKA PIRNKKHMGG
1101: ELFVKVTMHG VRGKKNIWSA LLETCLPIMD MIDWTRSHPD NIRQCCSVYG IDAGRSIFLA DLESAVSDTG KGMLREHLLL VADCLSVTGE FVALNPKGWS
1201: KQRQAESTPA PFTQACFSSP SQCFLKAAKE GVTDELQGSI DALAWGKVPS FGTGDQFEII ISPKDHGFSS TPVDVYDFLS STATLPKRKA SSLPKSDKFT
1301: LQPFPLLDTA LSKAVKTLDG KGLTRSQLRM IFTWDDIEKL SRSLKRILYN YEIDATLNER DERLLMMALL FHPHRDEKIG PGFQGIKVAN SKHGNARCFE
1401: VVRTDGTTED FSYHKCVLGA TEIIAPKRVN FYKAKYLRNG TVQAGTI
0101: KYMRKKQSQS TEDWPERCRY CTSNTGYPLM KFRVTTKEVF RRSGIVCEVS DDNLFKLSKR GLSSLPPDYW EFLPKDSNID ESCLKPSRRI LTHAQVYALL
0201: CGIDERLIRK DIPMFDSLPL TSFPVTPNGH RVSEMVNQFT GARLVFDERT RIYKKLVGFE GNGLELSARV IECMQYSRLF SENMSPSQES ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP RRIAERLQVS ENLNDWNRER LVTSCFHKLL ERGETHVRRG GSLVAIRVID DLQTGDSILR
0401: TLKDGDTVLM NRPPSIHQHS LIAMSVKVLP TTSVVSLNPI CCLPFRGDFD GDCFHGYVPQ SIQAKVELDE LVALDKQLVN RQNGRNLLSL GQDSLTAAYL
0501: VNVETNCFLN RAQMQQLQMY CPFELPPPAI IKASSSEPQW TGMQIFGMLL PPGFEYTCPL NDVVVSSGEL LSSSDGSAWL RDGEGNFIQG LLKEHKEKVL
0601: DIMYSTQEMF SQELQMRGLS VSLTDLYLAS DPESRRNLTE EISYGLQEAE QVCNKQQLMV ESRRDFLAGN VEDLSADFDR FCYERQRSAT LSKLAVSAFK
0701: DAYRDVQSLA YRYGDHSNSF LIMSKAGSKG NIGKLAQHSM CVGLQNSSVA LSFGFPRKLT CASWNDPNSP LRGAKREDQT GHESFVPFGV IENSFLTGLN
0801: PLESFVHSVT SRDSSFSGNA DIPGALNRKL MFFMRDIYAA YDGTVRNSFG NHLVQFRYET DDAEEDMAGE AVGSLSACAL TEAAYSALDQ PISLLETSPL
0901: LNLKNVLECG SKKGLKEQTM SLYLSETLSK KKHGFEYGAL DIKSHLEKLS FSEIVSTSMI IFSPRTNTKM PMSSWVCHFH ISKKVLKQKQ LDVGSVVSSL
1001: NKQYANRKKE LKLDVIDLEI QSTNHCSWDD KSMEDDRFCI TVTVLETSTH GSLELDAIRL VLIPFLLDSP VKGYREIKKV EILWVDRPKA PIRNKKHMGG
1101: ELFVKVTMHG VRGKKNIWSA LLETCLPIMD MIDWTRSHPD NIRQCCSVYG IDAGRSIFLA DLESAVSDTG KGMLREHLLL VADCLSVTGE FVALNPKGWS
1201: KQRQAESTPA PFTQACFSSP SQCFLKAAKE GVTDELQGSI DALAWGKVPS FGTGDQFEII ISPKDHGFSS TPVDVYDFLS STATLPKRKA SSLPKSDKFT
1301: LQPFPLLDTA LSKAVKTLDG KGLTRSQLRM IFTWDDIEKL SRSLKRILYN YEIDATLNER DERLLMMALL FHPHRDEKIG PGFQGIKVAN SKHGNARCFE
1401: VVRTDGTTED FSYHKCVLGA TEIIAPKRVN FYKAKYLRNG TVQAGTI
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.