Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27976 | Soybean | nucleus | 94.99 | 95.19 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 57.58 | 58.55 |
| Solyc08g080210.2.1 | Tomato | nucleus | 43.72 | 52.82 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 48.94 | 49.07 |
| CDY50743 | Canola | nucleus | 27.18 | 48.53 |
| CDY32191 | Canola | nucleus | 47.98 | 48.41 |
| CDX93859 | Canola | nucleus | 48.04 | 48.38 |
| Bra027611.1-P | Field mustard | nucleus | 47.49 | 47.96 |
| CDY49206 | Canola | nucleus | 47.84 | 47.74 |
| CDY68589 | Canola | cytosol | 15.37 | 42.03 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.26 | 41.89 |
| Zm00001d031457_P009 | Maize | nucleus | 31.09 | 41.64 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 13.31 | 40.59 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 38.44 | 39.3 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 38.44 | 39.3 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 39.4 | 38.68 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 37.68 | 38.47 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 38.23 | 37.18 |
| Os09t0555200-01 | Rice | cytosol | 7.34 | 33.65 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 37.68 | 32.8 |
| Os04t0572600-01 | Rice | cytosol | 9.61 | 31.04 |
| Zm00001d031459_P001 | Maize | cytosol | 6.73 | 29.52 |
| KRG88695 | Soybean | nucleus | 18.05 | 18.91 |
| KRH20723 | Soybean | nucleus | 22.92 | 16.53 |
| KRH71957 | Soybean | nucleus | 14.48 | 16.38 |
| KRH33046 | Soybean | nucleus | 18.39 | 16.23 |
| KRH13386 | Soybean | nucleus | 22.79 | 15.95 |
| KRH28855 | Soybean | nucleus | 19.22 | 15.33 |
| KRH76591 | Soybean | nucleus | 19.15 | 15.27 |
| KRH40807 | Soybean | nucleus | 18.53 | 15.24 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | EntrezGene:100810483 |
| MapMan:15.1.4.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | EMBL:ACUP02000673 | EnsemblPlantsGene:GLYMA_01G215700 |
| GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005666 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | UniProt:I1JA29 | InterPro:IPR038120 |
| ProteinID:KRH77476.1 | EnsemblPlants:KRH77477 | ProteinID:KRH77477 | ProteinID:KRH77477.1 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | UniParc:UPI000295DE98 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:54623885..54637960
Molecular Weight (calculated)
163750.0 Da
IEP (calculated)
7.779
GRAVY (calculated)
-0.256
Length
1457 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDDLLQRNK TPSVVIKAIK FDVLTEEDIE NISVLEINAA GQVTGSNLGL PNASDECATC GTKDKKFCEG HFGVIKFPTP ILHPYFMLEI AHILNKICPV
0101: CKSIRHKSKG ARLIYGTKRS NDCNYCSVYP SMQFRVSSND LFRRTAIIVE VKASKKTLGT EIPADFWNFI PCDAQQEENY VNRRVLSPVQ VNYLLNDVDP
0201: DFIEKYIPRK NLLCLNCFPV TPNCHRVTEV PYAISSGSRL SFDDRTRSCK KLVDFRGTAN ELSSRVLDCL RISKLNPDKT PNSIFADIQQ RKIGENAFNS
0301: SGLRWIKDVV LGKRNDSSFR TVVVGDPDLE LSEIGIPCHI AESLQVSEYV NRQNREKLLY CCELHLLEKG KINVCRKGSI VHLYKKEDLQ IGDKFYRPLA
0401: DGDKVLINRP PSIHQHSMIS LTVRVLPISS VVCINPLCCS PLRGDFDGDC LHGYIPQSVT ARIELNELVA LDRQLINGQS GRNLLSLSQD SLTAAYLLME
0501: DGVLLNVYQM QQLQMLSISN KRLIPPAVVK APSSNSSLWN GKQLFSMLLP YDFDYSFPSD GVVVSDGELV SSSEASGWLR DSDYNVFQSL VEHYQGKTLN
0601: FLYAAQKVLC EWLSMTGFSV SLSDLYLSSD SYARENMIEE IFYGLQDAER ACNFKQLLLD YYCDFLSGSL QESENAITVN ADRLNYERQI SASLSQASVD
0701: AFRQVFRNIQ SLADKYACKG NSFLAMFKAG SKGNLLKLVQ HSMCLGMQNS LVRLSYRLPR HLSCADWNSQ KWVDSIQMSS GTLESVQSYI PYAVVESSFL
0801: TGLNPLECFV HSVTNRDSSF SDHADLPGTL TRRLMFFMRD LYDAYDGTVR NLYGNQLIQF SYDIEEDSSC NKGFQQYALG GESVGAISAC AISEAAYSAL
0901: GQPVSLLETS PLLNLKNVLE CGSRKRNGDQ TVSLFLSEKL GKQRHGFEYA ALEVKNYLER LLFSNIVSKV MIIFTPHDSR SQEKYSPWVC HFHLDKEIVT
1001: RRKLKVHSII DSLYQRYYSQ RKDSKVCFTN LKISSRKCSA DSMVKEGEDT SIDKEEGDDC IMVTIVENSK NPIQLDSVRD LVIPFLLGTA IQGFLDVKKV
1101: DILWNNQSKV TNSRNGFSGE LYLRVTLSSE GSRGRFWGVL LKLCHKIMHI IDWTRSHTDN INHFSSAYGI DAGWQYFFNS LACATSDTGK SILPKHLCLV
1201: ANSLSCSGEF VGLNAKGMAL QRKHASVSSP FVQACFANPG SCFIKAAKSG ATDNLQGSLD GLAWGNCLSM GTSGMFDVIY SEKGHQVAKS VDVYELLEAS
1301: FDKPNNKIGT HLHKYSSDKC GSEFRHKNGY ALKEGKQWKT ILRNFVTVND IQKLTFASRC ILNKYSIDEL LSESDRSTML RVLNFHPHKS EKFGIGPQDI
1401: KVGWHPKYKD SRCFHIIRTD GTVEDFSYRK CILGALDIVD PKKSKIQEKK WSGHGDT
0101: CKSIRHKSKG ARLIYGTKRS NDCNYCSVYP SMQFRVSSND LFRRTAIIVE VKASKKTLGT EIPADFWNFI PCDAQQEENY VNRRVLSPVQ VNYLLNDVDP
0201: DFIEKYIPRK NLLCLNCFPV TPNCHRVTEV PYAISSGSRL SFDDRTRSCK KLVDFRGTAN ELSSRVLDCL RISKLNPDKT PNSIFADIQQ RKIGENAFNS
0301: SGLRWIKDVV LGKRNDSSFR TVVVGDPDLE LSEIGIPCHI AESLQVSEYV NRQNREKLLY CCELHLLEKG KINVCRKGSI VHLYKKEDLQ IGDKFYRPLA
0401: DGDKVLINRP PSIHQHSMIS LTVRVLPISS VVCINPLCCS PLRGDFDGDC LHGYIPQSVT ARIELNELVA LDRQLINGQS GRNLLSLSQD SLTAAYLLME
0501: DGVLLNVYQM QQLQMLSISN KRLIPPAVVK APSSNSSLWN GKQLFSMLLP YDFDYSFPSD GVVVSDGELV SSSEASGWLR DSDYNVFQSL VEHYQGKTLN
0601: FLYAAQKVLC EWLSMTGFSV SLSDLYLSSD SYARENMIEE IFYGLQDAER ACNFKQLLLD YYCDFLSGSL QESENAITVN ADRLNYERQI SASLSQASVD
0701: AFRQVFRNIQ SLADKYACKG NSFLAMFKAG SKGNLLKLVQ HSMCLGMQNS LVRLSYRLPR HLSCADWNSQ KWVDSIQMSS GTLESVQSYI PYAVVESSFL
0801: TGLNPLECFV HSVTNRDSSF SDHADLPGTL TRRLMFFMRD LYDAYDGTVR NLYGNQLIQF SYDIEEDSSC NKGFQQYALG GESVGAISAC AISEAAYSAL
0901: GQPVSLLETS PLLNLKNVLE CGSRKRNGDQ TVSLFLSEKL GKQRHGFEYA ALEVKNYLER LLFSNIVSKV MIIFTPHDSR SQEKYSPWVC HFHLDKEIVT
1001: RRKLKVHSII DSLYQRYYSQ RKDSKVCFTN LKISSRKCSA DSMVKEGEDT SIDKEEGDDC IMVTIVENSK NPIQLDSVRD LVIPFLLGTA IQGFLDVKKV
1101: DILWNNQSKV TNSRNGFSGE LYLRVTLSSE GSRGRFWGVL LKLCHKIMHI IDWTRSHTDN INHFSSAYGI DAGWQYFFNS LACATSDTGK SILPKHLCLV
1201: ANSLSCSGEF VGLNAKGMAL QRKHASVSSP FVQACFANPG SCFIKAAKSG ATDNLQGSLD GLAWGNCLSM GTSGMFDVIY SEKGHQVAKS VDVYELLEAS
1301: FDKPNNKIGT HLHKYSSDKC GSEFRHKNGY ALKEGKQWKT ILRNFVTVND IQKLTFASRC ILNKYSIDEL LSESDRSTML RVLNFHPHKS EKFGIGPQDI
1401: KVGWHPKYKD SRCFHIIRTD GTVEDFSYRK CILGALDIVD PKKSKIQEKK WSGHGDT
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.