Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | KRH33288 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | KRH71626 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | KRH76336 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | KRG93223 | AT1G53720.1 | 16497658 |
| AT4G35800.1 | KRH13056 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28855 | Soybean | nucleus | 93.57 | 90.75 |
| KRH76591 | Soybean | nucleus | 93.45 | 90.64 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 23.31 | 86.22 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 89.95 | 86.07 |
| PGSC0003DMT400009249 | Potato | nucleus | 88.15 | 84.94 |
| Solyc02g083350.2.1 | Tomato | nucleus | 88.21 | 84.67 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 53.5 | 84.49 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 40.97 | 84.03 |
| Bra010510.1-P | Field mustard | nucleus | 85.44 | 83.0 |
| AT4G35800.1 | Thale cress | nucleus | 85.67 | 82.54 |
| Zm00001d024583_P003 | Maize | nucleus | 85.61 | 82.0 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 85.38 | 81.7 |
| EES13372 | Sorghum | nucleus | 85.44 | 81.53 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 85.44 | 81.44 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 85.44 | 81.44 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 12.13 | 81.44 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 84.03 | 80.36 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 66.65 | 80.29 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 84.09 | 80.19 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 84.03 | 80.1 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 39.22 | 80.07 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 39.22 | 80.07 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 39.05 | 79.45 |
| CDY71816 | Canola | cytosol | 12.7 | 78.95 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 62.7 | 78.91 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 84.26 | 78.87 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 81.43 | 78.85 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 80.7 | 78.7 |
| CDY08876 | Canola | nucleus | 71.28 | 78.01 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 78.33 | 77.93 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 80.7 | 77.42 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 79.06 | 76.89 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 39.28 | 76.48 |
| Os05t0151000-00 | Rice | nucleus | 78.39 | 75.41 |
| EES08565 | Sorghum | nucleus | 78.89 | 74.44 |
| Bra011638.1-P | Field mustard | nucleus | 82.22 | 53.78 |
| CDX69166 | Canola | cytosol | 79.01 | 53.03 |
| CDX75527 | Canola | nucleus | 81.26 | 53.02 |
| KRG88695 | Soybean | nucleus | 25.73 | 32.78 |
| KRH33046 | Soybean | nucleus | 21.84 | 23.44 |
| KRH71957 | Soybean | nucleus | 16.76 | 23.06 |
| KRH27976 | Soybean | nucleus | 15.35 | 18.71 |
| KRH77477 | Soybean | nucleus | 15.24 | 18.53 |
| KRH20723 | Soybean | nucleus | 16.65 | 14.6 |
| KRH13386 | Soybean | nucleus | 16.82 | 14.31 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.2.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 | Gene3D:3.30.1490.180 | EMBL:ACUP02006060 |
| ncoils:Coil | EnsemblPlantsGene:GLYMA_09G278900 | GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| UniProt:I1L748 | InterPro:IPR038120 | InterPro:IPR038593 | EnsemblPlants:KRH40807 | ProteinID:KRH40807 | ProteinID:KRH40807.1 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04990 | PFAM:PF04992 | PFAM:PF04997 | PFAM:PF04998 |
| PFAM:PF05000 | PFAM:PF05001 | ScanProsite:PS00115 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_II_repeat_euk |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 |
| InterPro:RNA_pol_Rpb1_7 | InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI000295AFAC | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:49416895..49425842
Molecular Weight (calculated)
197296.0 Da
IEP (calculated)
5.864
GRAVY (calculated)
-0.465
Length
1772 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVRFPFSPA EVAKVATVQF GIISPDEIRQ MSVVQIEHGE TTERGKPKIG GLSDPRLGTI DRKLKCDTCT GSMAECPGHF GHLELAKPMF HIGFLKTVLA
0101: IMRCVCFNCS KILANEDDHK FKLALRIRNP KNRLRKILDA CKNKSKCEGG DDIDIHGKDT GEPVKKSRGG CGAQQPKITI EGMKINAEYK AQRKKSDDQE
0201: QLPEPVERKQ TLSAERVLSV LKRISDEDCQ LLGLNPQYAR PDWMILQVLP IPPQPVRPSV MMDTSSRSED DLTHQLAMII RHNENLKRQE KNGSPAHIIS
0301: EFVQLLQFHV ATYFDNELPG LPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPTIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR DDGQRLDLRY LKKSSDHHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSLET RAEVLELMMV PKCIVSPQSN KPVMGIVQDT LLGCRKITKR DTFITKDVFM NILMWWEDFD GKVPAPTILK PEPLWTGKQV FNLIIPKQIN
0601: LIRFSSWHSD DERGPITPGD TMVRIEKGEL LTGTLCKKTL GASAGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNAF SMGIGDTIAD ASTMEAINQT
0701: ISLAKEKVKQ LIRDAQEKKL EAEPGRTMMD SFENRVNQTL NKARDDAGNS AGNSLSESNN LKAMVTAGSK GSNINISQMT ACVGQQNVEG KRIPYGFVDR
0801: TLPHFTKDDH GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMLKY DGTVRNSLGD VIQFLYGEDG MDAIWIETQK
0901: LDTLKMKKTE FDRVFRYEFD EENWKPNYML QEPVEDLKTI REFRNVFEAE VQKLEADRHQ LAIEIASNGD NSLPLPVNLK RLIWNAQKTF KVDFRRPSDM
1001: HPMEIVEAID KLQERLKVVP GEDALSQEAQ KNATLLFNIL LRSTFASKRV LEEYRLSRES FEWVVGEIES RFLQSLVVPG EMIGVVAAQS IGEPATQMTL
1101: NTFHFAGVSA KNVTLGVPRL RELINVAKSI KTPSLSVYLK PDAGKTKERA KTVQCALEYT TLRSVTQATE VWYDPDPMST IIEEDVDFVM SYYEMPDEEV
1201: ALEKISPWLL RVELNREMMI NLEFDDDLSC IFNDDNAEKL ILRIRIMNDD APKGEVQDES AEDDVFLKKI ETNMLTEMTL RGIPDINKVF IKNAKVQKFD
1301: ENEGFKSNGE WMLDTEGVNL LAVMCHEDVD ATRTTSNHLI EVIEVLGIEA VRRSLLDELR IVISFDGSYV NYRHLAILCE TMTYRGHLMA ITRHGINRND
1401: TGPMMRCSFE ETVDILLDAA AYAETDSLRG VTENIILGQL APIGTGQCAL YLNDGMLKNA IELQLPSYTD GLDFGIMSGA TPYHEGTMMS PSYLLSPNLR
1501: LSPSSDAQFS PYVGGMAFSP SSSPGYSPSS PGYSPSSPGY SPTSPGYSPT SPGYSPTSPT YSPSSPGYSP TSPAYSPTSP SYSPTSPAYS PTSPAYSSTS
1601: PAYSPTSPSY SPTSPAYSPT SPSYSLTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPSYS PTSPSYSPTS PSYNPQSAKY SPSLAYSPSS PRLSPTSPNY
1701: SPTSPSYSPT SPSYSPSSPT YSPSSPYNSG VSPDYSPTSP QFSPSAGYSP SQPGYSPSST SQDTPQTSDK DE
0101: IMRCVCFNCS KILANEDDHK FKLALRIRNP KNRLRKILDA CKNKSKCEGG DDIDIHGKDT GEPVKKSRGG CGAQQPKITI EGMKINAEYK AQRKKSDDQE
0201: QLPEPVERKQ TLSAERVLSV LKRISDEDCQ LLGLNPQYAR PDWMILQVLP IPPQPVRPSV MMDTSSRSED DLTHQLAMII RHNENLKRQE KNGSPAHIIS
0301: EFVQLLQFHV ATYFDNELPG LPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPTIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR DDGQRLDLRY LKKSSDHHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSLET RAEVLELMMV PKCIVSPQSN KPVMGIVQDT LLGCRKITKR DTFITKDVFM NILMWWEDFD GKVPAPTILK PEPLWTGKQV FNLIIPKQIN
0601: LIRFSSWHSD DERGPITPGD TMVRIEKGEL LTGTLCKKTL GASAGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNAF SMGIGDTIAD ASTMEAINQT
0701: ISLAKEKVKQ LIRDAQEKKL EAEPGRTMMD SFENRVNQTL NKARDDAGNS AGNSLSESNN LKAMVTAGSK GSNINISQMT ACVGQQNVEG KRIPYGFVDR
0801: TLPHFTKDDH GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMLKY DGTVRNSLGD VIQFLYGEDG MDAIWIETQK
0901: LDTLKMKKTE FDRVFRYEFD EENWKPNYML QEPVEDLKTI REFRNVFEAE VQKLEADRHQ LAIEIASNGD NSLPLPVNLK RLIWNAQKTF KVDFRRPSDM
1001: HPMEIVEAID KLQERLKVVP GEDALSQEAQ KNATLLFNIL LRSTFASKRV LEEYRLSRES FEWVVGEIES RFLQSLVVPG EMIGVVAAQS IGEPATQMTL
1101: NTFHFAGVSA KNVTLGVPRL RELINVAKSI KTPSLSVYLK PDAGKTKERA KTVQCALEYT TLRSVTQATE VWYDPDPMST IIEEDVDFVM SYYEMPDEEV
1201: ALEKISPWLL RVELNREMMI NLEFDDDLSC IFNDDNAEKL ILRIRIMNDD APKGEVQDES AEDDVFLKKI ETNMLTEMTL RGIPDINKVF IKNAKVQKFD
1301: ENEGFKSNGE WMLDTEGVNL LAVMCHEDVD ATRTTSNHLI EVIEVLGIEA VRRSLLDELR IVISFDGSYV NYRHLAILCE TMTYRGHLMA ITRHGINRND
1401: TGPMMRCSFE ETVDILLDAA AYAETDSLRG VTENIILGQL APIGTGQCAL YLNDGMLKNA IELQLPSYTD GLDFGIMSGA TPYHEGTMMS PSYLLSPNLR
1501: LSPSSDAQFS PYVGGMAFSP SSSPGYSPSS PGYSPSSPGY SPTSPGYSPT SPGYSPTSPT YSPSSPGYSP TSPAYSPTSP SYSPTSPAYS PTSPAYSSTS
1601: PAYSPTSPSY SPTSPAYSPT SPSYSLTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPSYS PTSPSYSPTS PSYNPQSAKY SPSLAYSPSS PRLSPTSPNY
1701: SPTSPSYSPT SPSYSPSSPT YSPSSPYNSG VSPDYSPTSP QFSPSAGYSP SQPGYSPSST SQDTPQTSDK DE
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.