Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g108430.2.1 | |
| Solyc07g066420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | Solyc01g108430.2.1 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | Solyc07g066420.2.1 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14890_001 | Banana | cytosol | 67.05 | 36.95 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 80.3 | 24.54 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 76.89 | 23.31 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 76.52 | 23.27 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 76.52 | 23.27 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 79.17 | 22.97 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 78.41 | 14.07 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 74.62 | 13.99 |
| PGSC0003DMT400009249 | Potato | nucleus | 84.85 | 12.18 |
| Solyc02g083350.2.1 | Tomato | nucleus | 84.85 | 12.13 |
| KRH40807 | Soybean | nucleus | 81.44 | 12.13 |
| KRH76591 | Soybean | nucleus | 83.33 | 12.04 |
| KRH28855 | Soybean | nucleus | 83.33 | 12.04 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 79.92 | 11.85 |
| Zm00001d024583_P003 | Maize | nucleus | 82.58 | 11.78 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 82.58 | 11.77 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 82.58 | 11.77 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 82.58 | 11.76 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 82.58 | 11.73 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 82.58 | 11.73 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 82.58 | 11.73 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 80.68 | 11.72 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 80.68 | 11.69 |
| EES13372 | Sorghum | nucleus | 82.2 | 11.69 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 82.2 | 11.67 |
| Os05t0151000-00 | Rice | nucleus | 81.44 | 11.67 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 80.68 | 11.64 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 80.68 | 11.53 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 82.58 | 11.52 |
| AT4G35800.1 | Thale cress | nucleus | 79.92 | 11.47 |
| EES08565 | Sorghum | nucleus | 79.17 | 11.13 |
| Bra010510.1-P | Field mustard | nucleus | 75.76 | 10.96 |
| CDX69166 | Canola | cytosol | 80.68 | 8.07 |
| Bra011638.1-P | Field mustard | nucleus | 79.55 | 7.75 |
| CDX75527 | Canola | nucleus | 75.0 | 7.29 |
| Solyc11g072730.1.1 | Tomato | nucleus | 37.5 | 7.12 |
| CDY71816 | Canola | cytosol | 7.58 | 7.02 |
| CDY08876 | Canola | nucleus | 42.8 | 6.98 |
| Solyc10g080350.1.1 | Tomato | nucleus | 29.17 | 4.59 |
| Solyc01g096390.2.1 | Tomato | nucleus | 20.83 | 3.28 |
| Solyc08g080210.2.1 | Tomato | nucleus | 13.26 | 2.9 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 4.17 | 0.98 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | MapMan:35.1 |
| GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005666 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | UniProt:K4BAJ1 | PFAM:PF00623 |
| PFAM:PF04997 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:Solyc02g083230.2 | EnsemblPlants:Solyc02g083230.2.1 | UniParc:UPI00027684B7 | SEG:seg |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:K4BAJ1]
Coordinates
chr2:+:46701692..46702992
Molecular Weight (calculated)
30416.9 Da
IEP (calculated)
9.792
GRAVY (calculated)
-0.480
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MILQALPVPL PPVRPSVMMD TSSRSEDDLT HQLAMIIRHN ENLKRQERNG APAHIISEFA QLLQFHIATY FDNDLPGQPR ATQRSGRSVK SICSRLKSKE
101: GRIRGNLMGK RVDFSARTVI TPYPTINIDQ LGVPWSIALK RTYPETVTPY NIESCFFVVV EMKPHTHQPI RNKKEELVEY GPHPPPGKTG AKYITRDDDQ
201: RLDLRYNHHL ELGYKVERHL NDGDFVLFNR QPSLHKMSIM GHRIKIMPYS TFCLNLSFIS FLQC
101: GRIRGNLMGK RVDFSARTVI TPYPTINIDQ LGVPWSIALK RTYPETVTPY NIESCFFVVV EMKPHTHQPI RNKKEELVEY GPHPPPGKTG AKYITRDDDQ
201: RLDLRYNHHL ELGYKVERHL NDGDFVLFNR QPSLHKMSIM GHRIKIMPYS TFCLNLSFIS FLQC
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.