Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G085700.1 | Wheat | cytosol | 95.39 | 95.39 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 94.24 | 93.92 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 91.01 | 86.81 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 44.7 | 81.0 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.27 | 76.52 |
| CDY71816 | Canola | cytosol | 23.39 | 71.23 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 30.53 | 67.43 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 83.06 | 49.01 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 70.51 | 43.47 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 90.78 | 42.39 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 87.44 | 40.96 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 84.91 | 40.27 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 84.79 | 39.85 |
| KRH40807 | Soybean | nucleus | 80.07 | 39.22 |
| KRH28855 | Soybean | nucleus | 82.14 | 39.03 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.49 | 38.93 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.6 | 38.84 |
| KRH76591 | Soybean | nucleus | 81.22 | 38.59 |
| AT4G35800.1 | Thale cress | nucleus | 79.84 | 37.68 |
| Bra010510.1-P | Field mustard | nucleus | 78.92 | 37.55 |
| CDY08876 | Canola | nucleus | 61.29 | 32.86 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 37.67 | 29.14 |
| CDX69166 | Canola | cytosol | 79.26 | 26.06 |
| CDX75527 | Canola | nucleus | 78.23 | 25.0 |
| Bra011638.1-P | Field mustard | nucleus | 76.27 | 24.44 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 34.56 | 21.51 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 25.92 | 13.58 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 19.59 | 11.93 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 9.56 | 11.54 |
| TraesCS3D01G522400.1 | Wheat | plastid | 18.89 | 10.19 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 21.66 | 9.66 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.2.1 |
| Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS7D01G182500 | EnsemblPlants:TraesCS7D01G182500.1 | TIGR:cd02733 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:135931756..135935287
Molecular Weight (calculated)
96922.0 Da
IEP (calculated)
7.174
GRAVY (calculated)
-0.363
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARFPYSPA EVAKVQLMQF GILSPDEIRQ MSVAVIEHAE TMERGKAKPG GLSDPRLGTI DEKIKCDTCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
101: IMRCVCFNCS KILADEEDTK FKQALKISNP KNRLRRIYDA CKSKKTCAGS DELEVQDQQD TDEPVKKRGG CGAQQPSITV DGMKMVAEFE ATKKKTDDQD
201: QLPELVERKQ ILCAERVLNV LKHISDEDCL LLGLNPKCAR PDWMILQVLP IPPPPVRPSV TVDTSSRTED DLTHQLAMII RHNENLRRQE RNGAPTHIIT
301: EFAQLLQFHI ATYFGNDLPG QPRANQHSGR PIKSICSRLK AKEGWIRGNL MGKRVDFSAR TVVTPDPNIN IDQLGVPWSV SLNLTYPETV TPYNIERLKE
401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSPHKMPIMG HRVKIMPCST FRLNLSVTSP YNADFDADEM
501: NMHVPQSFET TAVVLELMMV SKCIVSPQAN IPAMGIVQDT LLGCRKITKR DTLIEKDVFM NMLMWWEDFD GKVPAPAILK PRPIWTGKQV FNLIIPKLIN
601: LISFSAWHAE TECGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIRV IWEEAGPDAA LKFLGNTQSL VNYWLLQNGF SIGIGDAIAD ADTMEKIDVT
701: IGTAKNDLKE LIKQAQEKNL EPEPGLTMME SFENRVNQIL SKAYDDAGSS AQKGLSESNN LKAMVTAGSN GSFINISQMT ACLGQQKIEG KRIPFGFVDR
801: TLPHFTKDDY GPESRGFVQN SYLRGLAPQE FFFHAMVSRE GLIATAVKTP RQHSAEAREG YGGHHGET
101: IMRCVCFNCS KILADEEDTK FKQALKISNP KNRLRRIYDA CKSKKTCAGS DELEVQDQQD TDEPVKKRGG CGAQQPSITV DGMKMVAEFE ATKKKTDDQD
201: QLPELVERKQ ILCAERVLNV LKHISDEDCL LLGLNPKCAR PDWMILQVLP IPPPPVRPSV TVDTSSRTED DLTHQLAMII RHNENLRRQE RNGAPTHIIT
301: EFAQLLQFHI ATYFGNDLPG QPRANQHSGR PIKSICSRLK AKEGWIRGNL MGKRVDFSAR TVVTPDPNIN IDQLGVPWSV SLNLTYPETV TPYNIERLKE
401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSPHKMPIMG HRVKIMPCST FRLNLSVTSP YNADFDADEM
501: NMHVPQSFET TAVVLELMMV SKCIVSPQAN IPAMGIVQDT LLGCRKITKR DTLIEKDVFM NMLMWWEDFD GKVPAPAILK PRPIWTGKQV FNLIIPKLIN
601: LISFSAWHAE TECGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIRV IWEEAGPDAA LKFLGNTQSL VNYWLLQNGF SIGIGDAIAD ADTMEKIDVT
701: IGTAKNDLKE LIKQAQEKNL EPEPGLTMME SFENRVNQIL SKAYDDAGSS AQKGLSESNN LKAMVTAGSN GSFINISQMT ACLGQQKIEG KRIPFGFVDR
801: TLPHFTKDDY GPESRGFVQN SYLRGLAPQE FFFHAMVSRE GLIATAVKTP RQHSAEAREG YGGHHGET
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.