Factsheet for VIT_00s0264g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114340.1	Barley	nucleus	68.96	31.37
TraesCS7B01G085700.1	Wheat	cytosol	67.94	30.76
TraesCS7D01G182500.1	Wheat	cytosol	67.43	30.53
TraesCS7A01G180700.1	Wheat	cytosol	67.43	30.42
HORVU7Hr1G037130.2	Barley	nucleus	65.9	28.46
GSMUA_Achr1P14890_001	Banana	cytosol	30.53	25.05
TraesCS2D01G427500.2	Wheat	nucleus	66.41	17.74
GSMUA_Achr3P00590_001	Banana	nucleus	58.52	16.34
VIT_18s0001g00860.t01	Wine grape	nucleus	76.59	16.25
TraesCS7B01G202000.2	Wheat	nucleus	74.3	15.77
Zm00001d024583_P003	Maize	nucleus	74.05	15.73
EES13372	Sorghum	nucleus	74.3	15.72
TraesCS7D01G297100.1	Wheat	nucleus	74.3	15.71
HORVU5Hr1G114400.2	Barley	nucleus	70.99	15.67
TraesCS7A01G301900.1	Wheat	nucleus	74.05	15.65
Os05t0151000-00	Rice	nucleus	72.77	15.53
TraesCS2D01G571500.1	Wheat	nucleus	73.03	15.49
TraesCS5B01G498800.1	Wheat	nucleus	71.76	15.48
TraesCS5B01G499000.1	Wheat	nucleus	71.25	15.41
TraesCS2A01G558100.1	Wheat	nucleus	72.77	15.39
TraesCS2B01G622300.1	Wheat	nucleus	72.77	15.38
TraesCS5D01G499000.1	Wheat	nucleus	71.5	15.36
TraesCS5D01G498900.1	Wheat	nucleus	72.01	15.32
HORVU2Hr1G126750.3	Barley	nucleus	72.77	15.11
EES08565	Sorghum	nucleus	71.76	15.02
GSMUA_Achr1P14900_001	Banana	nucleus	39.69	13.9
VIT_06s0004g03740.t01	Wine grape	nucleus	30.28	11.09
VIT_13s0067g03120.t01	Wine grape	nucleus	19.85	7.83
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	26.21	6.09
VIT_02s0025g04530.t01	Wine grape	nucleus	20.61	5.65
VIT_00s0264g00080.t01	Wine grape	cytosol	0.25	0.61
VIT_06s0004g03730.t01	Wine grape	mitochondrion, nucleus, plastid	0.25	0.3

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.20.120.1280	Gene3D:2.40.40.70	MapMan:35.1
ProteinID:CCB49219	ProteinID:CCB49219.1	UniProt:F6HAH5	EMBL:FN595505	GO:GO:0001055	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665	GO:GO:0006139
GO:GO:0006351	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	PFAM:PF00623	PFAM:PF04983	PFAM:PF04997	PANTHER:PTHR19376
PANTHER:PTHR19376:SF37	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_asu	SMART:SM00663
SUPFAM:SSF64484	UniParc:UPI0002107EED	ArrayExpress:VIT_00s0264g00070	EnsemblPlantsGene:VIT_00s0264g00070	EnsemblPlants:VIT_00s0264g00070.t01	SEG:seg

Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6HAH5]

Coordinates

chrUn:+:19032636..19035628

Molecular Weight (calculated)

44938.7 Da

IEP (calculated)

8.830

GRAVY (calculated)

-0.433

Length

393 amino acids

Sequence
(BLAST)

001: MKRGKPKRGG LADPRLGTMD KTQKCDTCMG SMAACPGHFG HLELAKPMFH TGFMRTVLTV LRCVCFSCSR ILSDEEDPKF KQALLIRNPK NRLPKIWDAC
101: KNKTKCEGGE EFEVRAQNPE ESSGRRSGGG CGAQQPKLSV DGMKIIAEFK AQKKRDDPEQ LPEPFQILIF FFFSDVRPRM NDGDYVLFNR QPSLHKMSFM
201: GHRINIMPYS TFRLNLSVAS PYNADFDGDE MNMHVPQSFE TRAEVLELMM VPKCIVSPQS NRPVMGIVQD TLLGCRKITR RDTFIEKDVF MNILMWWEDF
301: DGKIPAPAIL KPRPLWIRKQ VFNLIIPKQI NLLRYSAWHS ECETGFLTPG DTQVRIEREE LLSGNRKSYT CHLVNINSVD SMISENFRPN TVG

Best Arabidopsis Sequence Match ( AT4G35800.1 )
(BLAST)

0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP

Arabidopsis Description

NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.