Factsheet for VIT_13s0067g03120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00890.t01
VIT_06s0009g01200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40030.1	VIT_03s0063g00890.t01	AT1G49590.1	23524848
AT2G40030.1	VIT_06s0009g01200.t01	AT2G27040.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096390.2.1	Tomato	nucleus	69.58	41.3
CDY60335	Canola	nucleus	63.76	33.98
GSMUA_Achr3P05700_001	Banana	nucleus	48.8	33.91
KRH20723	Soybean	nucleus	67.37	33.22
AT2G40030.1	Thale cress	nucleus	65.66	33.1
KRH13386	Soybean	nucleus	68.47	32.76
Bra000162.1-P	Field mustard	nucleus	63.86	30.89
TraesCS6B01G094400.1	Wheat	nucleus	46.89	29.32
TraesCS6B01G151900.1	Wheat	nucleus	55.32	28.29
TraesCS6D01G113900.1	Wheat	nucleus	54.92	28.09
TraesCS6A01G123800.1	Wheat	nucleus	55.22	28.09
HORVU6Hr1G022890.1	Barley	nucleus	55.22	27.89
Zm00001d053872_P021	Maize	nucleus	54.12	27.66
OQU84386	Sorghum	nucleus	54.02	26.7
CDY07630	Canola	nucleus	54.62	23.73
VIT_00s0264g00070.t01	Wine grape	nucleus	7.83	19.85
VIT_02s0025g04530.t01	Wine grape	nucleus	24.3	16.89
VIT_06s0004g03740.t01	Wine grape	nucleus	17.67	16.4
VIT_00s0264g00080.t01	Wine grape	cytosol	2.31	13.94
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	22.69	13.36
VIT_18s0001g00860.t01	Wine grape	nucleus	23.49	12.63
VIT_06s0004g03730.t01	Wine grape	mitochondrion, nucleus, plastid	1.61	4.83

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.20.120.1280	EntrezGene:100266900	wikigene:100266900	MapMan:15.1.5.1
Gene3D:2.40.40.20	Gene3D:3.30.1490.180	ProteinID:CCB62281	ProteinID:CCB62281.1	UniProt:F6I5R3	EMBL:FN596752
GO:GO:0000287	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005666	GO:GO:0006139	GO:GO:0006351	GO:GO:0006383	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010333	GO:GO:0016740	GO:GO:0016779
GO:GO:0016829	EntrezGene:LOC100266900	wikigene:LOC100266900	PFAM:PF00623	PFAM:PF04983	PFAM:PF04997
PANTHER:PTHR19376	PANTHER:PTHR19376:SF36	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_asu
SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0002108C09	ArrayExpress:VIT_13s0067g03120	EnsemblPlantsGene:VIT_13s0067g03120	EnsemblPlants:VIT_13s0067g03120.t01
RefSeq:XP_002265533	RefSeq:XP_002265533.1	:	:	:	:

Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6I5R3]

Coordinates

chr13_random:-:1694254..1719103

Molecular Weight (calculated)

111826.0 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.198

Length

996 amino acids

Sequence
(BLAST)

001: MEEDSSTILD GEISGIRFGL ATRQEICIAS VSDCPISHAS QLTNPFLGLP LEFGKCESCG TAEPGQCEGH FGYIELPIPI YHPGHVSELK RMLSLLCLKC
101: LKIRKSKVTN NGITEQLLAP CCQDSPQVSV REFRPTEGAC FLELKIPSRS RPKDGFWDFL ARYGYRYGHN LSRILLPSEV MEILRRIPED TRKKLVRKGY
201: FPQDGYILQY LPVPPNCLSV PDISDGVSIM SSDLSVSMLK KVLKQIEVIK GSRSGEPNFE SHKIEANNLQ SSIEQYLEVR GTAKTSRSLD TRFGSSKEPN
301: ESSTKAWLEK MRTLFIRKGS GFSSRSVITG DAYKRVNEIG LPFEIAQRIT FEERVNVHNM KHLQNLVDEK LCLTYRDGLS TYSLREGSKG HTFLRPGQVV
401: HRRIMDGDIV FINRPPTTHK HSLQALSVYV HDDHTVKINP LICGPLSADF DGDCVHLFYP QSLGAKAEVL ELFSVEKQLL SSHSGNLNLQ LATDSLLSLK
501: VLFERYFLNK AAAQQLVMFV SMSLPRPALL KSPCSGPCWT ALQILQTALP SYFDCIGERH WISKSAILKV DYNRDVLQSL VNEIVTSIFS EKGPNEVLKF
601: FDSLQPLLME NLFSEGFSVS LEDFSIPSEV TQNIQKNVED ISSLLYNLRS MYNELLQLQA ENHLRLTKVP VANFILNSSA LGNLIDSKSD SAINKVVQQI
701: GFLGQQLSEK GKFYSRTLVE GMAYLFKSKY PFHGADYPSG EFGLIRSCFF HGLDPYEEMV HSISTREIIV RSSRGLSEPG TLFKNLMAIL RDVVICYDGT
801: VRNVCSNSII QFEYGVKART KPQHFFPAGE PVGVLAATAM SNPAYKAVLD SSPSSNSSWE LMKEILLCQV NFKNDLIDRR VILYLNDCDC GRKYCRENAA
901: YLVKNQLKKA SLKDTAVEFM IEYVKQHAVS GSSEPGTGLV GHIHLNKLLL QDLNVSMQEV CQKCEETINS FRKKKNVGPF FKKIILSFRT SSPPKP

Best Arabidopsis Sequence Match ( AT2G40030.1 )
(BLAST)

0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT

Arabidopsis Description

NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.