Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33046 | Soybean | nucleus | 61.38 | 62.87 |
| Solyc10g080350.1.1 | Tomato | nucleus | 60.91 | 61.42 |
| KRH71957 | Soybean | nucleus | 46.66 | 61.26 |
| CDY06084 | Canola | nucleus | 53.4 | 59.37 |
| CDX72007 | Canola | nucleus | 53.46 | 58.89 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 52.04 | 58.74 |
| CDX67702 | Canola | nucleus | 52.16 | 58.45 |
| Bra007345.1-P | Field mustard | nucleus | 56.65 | 58.41 |
| CDY65464 | Canola | nucleus | 32.29 | 58.27 |
| Bra003294.1-P | Field mustard | nucleus | 54.23 | 58.04 |
| AT3G57660.1 | Thale cress | nucleus | 57.07 | 57.78 |
| CDY65462 | Canola | nucleus | 12.18 | 57.54 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.22 | 53.19 |
| Os06t0612200-01 | Rice | nucleus | 7.16 | 51.05 |
| Zm00001d029055_P010 | Maize | nucleus | 50.27 | 50.3 |
| KXG22455 | Sorghum | nucleus | 50.5 | 49.31 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 47.25 | 48.28 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 47.13 | 48.1 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 47.19 | 47.9 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 47.25 | 44.94 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 3.13 | 32.12 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 17.27 | 27.21 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 6.09 | 26.21 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 5.03 | 25.68 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 13.36 | 22.69 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 23.48 | 21.44 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 14.31 | 16.89 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| EntrezGene:100250406 | wikigene:100250406 | MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 |
| Gene3D:3.30.70.2850 | ProteinID:CCB55152 | ProteinID:CCB55152.1 | ncoils:Coil | InterPro:DNA-dir_RNA_pol1_lsu | UniProt:F6HL45 |
| EMBL:FN595991 | GO:GO:0001054 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006360 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | EntrezGene:LOC100250406 | wikigene:LOC100250406 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | TIGR:TC61843 | TIGR:TC62266 | UniParc:UPI00021098EE |
| ArrayExpress:VIT_08s0007g08090 | EnsemblPlantsGene:VIT_08s0007g08090 | EnsemblPlants:VIT_08s0007g08090.t01 | unigene:Vvi.8528 | RefSeq:XP_002277555 | RefSeq:XP_002277555.1 |
| RefSeq:XP_010653802.1 | SEG:seg | : | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6HL45]
Coordinates
chr8:-:21442400..21462777
Molecular Weight (calculated)
188526.0 Da
IEP (calculated)
7.063
GRAVY (calculated)
-0.412
Length
1691 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAHVIEGTTE FVEAVKFSFF TDEEVRKYSF KKITSPLMLD SVQRPVPGGL YDPALGSIDE NTPCQSCGQR SFYCPGHCGH IDLVSSVYNP LLFNLLHNLL
0101: QKTCFFCHHF KTSSSLVQKY VSQLELISKG DVVGAKNLDS ISPSESSYPE DSDGSHVSCS STVNSSARDN CSVHLKQQEW TSLQCIEAMS VMDNFLKLKH
0201: RDCKNCKAKS PQVTKPTFGW FHMAGLSDAQ TRANVIRGSK LERPLSRVAE EKSSSEVENV NDMFPWGDGV DTDETHSSIA PTDGIQDTVT KRLERKGAQA
0301: PIEFIKQKSF FSGPLLPSEV RDIMERLWEN EAELCSFISD ILQERLGASG NKAGYSMFFL ETILVPPIKF RPPSKGQISV MEHPQTVLLG KVLQANIALG
0401: NAHANNSERS KIISRWMDLQ QSINVLFDGK TAAGQGQRDT GSGICQLLEK KEGVFRQKMM GKRVNFACRS VISPDPYLAV NEIGIPPYFA LRLTYPEKVT
0501: PWNVVKLRDA IINGPEIHPG ATHYVDKLST VKLAVNKKMR ISISRKLPSS RGVVAQPGRS SDNEFEGKIV YRHLQDGDIV LVNRQPTLHK PSIMAHVVRV
0601: LKGEKTLRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA YNIVNANNQY IVPSRGDPIR GLIQDHIVSA VLLTKKDTFL TREQYNQLLY SSGLSSGSGS
0701: FIGKPGKKVS VLDSEDEMQP LLPAIWKPEP LWSGKQVITA VLNHITRGRK PFTTEKDGKI PREYFGSEID EKKSGKGKDP GSDRRKEKRI EKKHGEYKLL
0801: IHKNELVRGV IDKAQFDKYG LVHMVQELYG SNTAGILLSV LSRLFTVFLQ MHGFTCGVDD LLISPNYDIA RKIELDKSEN IGELVHCKFI GSNHGKIDPV
0901: KLQVEVEKII LSNGEAAITR LDRMMKNELN ELTSKVNKDL LLKGLVKPFP KNCLSLMTTT GAKGSTVNFS QISSFLGQQD LEGKRVPRMV SGKTLPCFPP
1001: WDCAARAGGF ISDRFLTGLH PQEYYFHCMA GREGLVDTAV KTSRSGYLQR CLIKNLECLK VCYDYTVRDS DGSIVQFNYG DDGVDVHQTS FITEFEALAV
1101: NEEVVCEKFG QDGKFNGYIQ KLPKELRKKT KKFIEGFMEE RQDFDNMKKQ KDFVNLVKQK YISSLAQPGE PVGVLAAQSV GEPSTQMTLN TFHLAGRGEV
1201: NVTLGIPRLQ EILMTAANDI KTPIMTCPLQ MGRSKDDAER LAAKLKKVTV ADITESMEVS IVPFTVQDHQ TCSIYKLKMK LYEPALYPPH TGISLEDCEE
1301: TLEAVFVREL EDAIQNHLLL LSKISGIKNF LPDSRSMASK ETDEDASGDG LAGGNGDEDD DGEDDGGAED LGLDAQKRKQ QASDEMDYGD SEGEPDEGEP
1401: SAGLTEEIDL VEDEVEISNN EEVGISDPKD EDSKVPSKSK SSKNKKAKTE AKRKKRFRAI KKDFDRAILV KAKGTYFEVH FRFTNEPHIL LAQIAQKAAN
1501: KVYIRSSGKI DLCQVIDCNK DQVIYYGRDP KKRENIPGEE KKKLPALQTA GVDFTAFWKM QDELDVRYVY SNNVHAMLNT FGVEAARATI IKEVFNVFNA
1601: YGVKVNIRHL SLIADFMTHS GGYRPMNRHG GIAESVSPFS KMTFETASKF IVEAASHGMT DNLESASARI CLGLPVKMGT GCFDLMQKIE I
0101: QKTCFFCHHF KTSSSLVQKY VSQLELISKG DVVGAKNLDS ISPSESSYPE DSDGSHVSCS STVNSSARDN CSVHLKQQEW TSLQCIEAMS VMDNFLKLKH
0201: RDCKNCKAKS PQVTKPTFGW FHMAGLSDAQ TRANVIRGSK LERPLSRVAE EKSSSEVENV NDMFPWGDGV DTDETHSSIA PTDGIQDTVT KRLERKGAQA
0301: PIEFIKQKSF FSGPLLPSEV RDIMERLWEN EAELCSFISD ILQERLGASG NKAGYSMFFL ETILVPPIKF RPPSKGQISV MEHPQTVLLG KVLQANIALG
0401: NAHANNSERS KIISRWMDLQ QSINVLFDGK TAAGQGQRDT GSGICQLLEK KEGVFRQKMM GKRVNFACRS VISPDPYLAV NEIGIPPYFA LRLTYPEKVT
0501: PWNVVKLRDA IINGPEIHPG ATHYVDKLST VKLAVNKKMR ISISRKLPSS RGVVAQPGRS SDNEFEGKIV YRHLQDGDIV LVNRQPTLHK PSIMAHVVRV
0601: LKGEKTLRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA YNIVNANNQY IVPSRGDPIR GLIQDHIVSA VLLTKKDTFL TREQYNQLLY SSGLSSGSGS
0701: FIGKPGKKVS VLDSEDEMQP LLPAIWKPEP LWSGKQVITA VLNHITRGRK PFTTEKDGKI PREYFGSEID EKKSGKGKDP GSDRRKEKRI EKKHGEYKLL
0801: IHKNELVRGV IDKAQFDKYG LVHMVQELYG SNTAGILLSV LSRLFTVFLQ MHGFTCGVDD LLISPNYDIA RKIELDKSEN IGELVHCKFI GSNHGKIDPV
0901: KLQVEVEKII LSNGEAAITR LDRMMKNELN ELTSKVNKDL LLKGLVKPFP KNCLSLMTTT GAKGSTVNFS QISSFLGQQD LEGKRVPRMV SGKTLPCFPP
1001: WDCAARAGGF ISDRFLTGLH PQEYYFHCMA GREGLVDTAV KTSRSGYLQR CLIKNLECLK VCYDYTVRDS DGSIVQFNYG DDGVDVHQTS FITEFEALAV
1101: NEEVVCEKFG QDGKFNGYIQ KLPKELRKKT KKFIEGFMEE RQDFDNMKKQ KDFVNLVKQK YISSLAQPGE PVGVLAAQSV GEPSTQMTLN TFHLAGRGEV
1201: NVTLGIPRLQ EILMTAANDI KTPIMTCPLQ MGRSKDDAER LAAKLKKVTV ADITESMEVS IVPFTVQDHQ TCSIYKLKMK LYEPALYPPH TGISLEDCEE
1301: TLEAVFVREL EDAIQNHLLL LSKISGIKNF LPDSRSMASK ETDEDASGDG LAGGNGDEDD DGEDDGGAED LGLDAQKRKQ QASDEMDYGD SEGEPDEGEP
1401: SAGLTEEIDL VEDEVEISNN EEVGISDPKD EDSKVPSKSK SSKNKKAKTE AKRKKRFRAI KKDFDRAILV KAKGTYFEVH FRFTNEPHIL LAQIAQKAAN
1501: KVYIRSSGKI DLCQVIDCNK DQVIYYGRDP KKRENIPGEE KKKLPALQTA GVDFTAFWKM QDELDVRYVY SNNVHAMLNT FGVEAARATI IKEVFNVFNA
1601: YGVKVNIRHL SLIADFMTHS GGYRPMNRHG GIAESVSPFS KMTFETASKF IVEAASHGMT DNLESASARI CLGLPVKMGT GCFDLMQKIE I
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.