Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 61.42 | 60.91 |
| KRH33046 | Soybean | nucleus | 55.75 | 56.63 |
| CDY65464 | Canola | nucleus | 31.07 | 55.6 |
| KRH71957 | Soybean | nucleus | 42.4 | 55.2 |
| CDY06084 | Canola | nucleus | 49.55 | 54.64 |
| CDX67702 | Canola | nucleus | 48.78 | 54.21 |
| CDX72007 | Canola | nucleus | 49.37 | 53.94 |
| Bra007345.1-P | Field mustard | nucleus | 52.36 | 53.54 |
| Bra003294.1-P | Field mustard | nucleus | 49.97 | 53.04 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 47.05 | 52.67 |
| AT3G57660.1 | Thale cress | nucleus | 52.12 | 52.34 |
| CDY65462 | Canola | nucleus | 10.67 | 50.0 |
| Zm00001d029055_P010 | Maize | nucleus | 48.48 | 48.11 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.36 | 47.93 |
| Os06t0612200-01 | Rice | nucleus | 6.74 | 47.68 |
| KXG22455 | Sorghum | nucleus | 48.72 | 47.17 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 46.27 | 46.89 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 46.15 | 46.71 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 46.09 | 46.4 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 45.86 | 43.25 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 4.59 | 29.17 |
| Solyc11g072730.1.1 | Tomato | nucleus | 22.9 | 27.63 |
| Solyc02g083350.2.1 | Tomato | nucleus | 22.84 | 20.75 |
| Solyc08g080210.2.1 | Tomato | nucleus | 11.99 | 16.67 |
| Solyc01g096390.2.1 | Tomato | nucleus | 14.37 | 14.36 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | ncoils:Coil | InterPro:DNA-dir_RNA_pol1_lsu |
| GO:GO:0001054 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| InterPro:IPR038120 | UniProt:K4D2S5 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 |
| PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| EnsemblPlantsGene:Solyc10g080350.1 | EnsemblPlants:Solyc10g080350.1.1 | UniParc:UPI00027694A1 | SEG:seg | : | : |
Description
DNA-directed RNA polymerase I subunit 1 [Source:Projected from Arabidopsis thaliana (AT3G57660) UniProtKB/Swiss-Prot;Acc:Q9SVY0]
Coordinates
chr10:+:61624237..61648612
Molecular Weight (calculated)
188341.0 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.477
Length
1677 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNQGASETVE AVHFSFMTDE EVRRHSVVKV TSPNLLDGLQ LPVPNGLYDP AMGPLDHYSQ CKFCSQSNCS GHCGHIELVS PVYNPLLFNM LHNLLQRTCF
0101: YCFHFRASRA EVEKCVSELE LIAKGDVVGA KMIDALSPDN STDREESEGS HMSCTMDDLN VRDHCEYNKR PSWDNFQFTE AMAVIDRILK TKTEKCSNCK
0201: AKNPKIRKPS FGRFHMDISN KQIRENYINS GRRFNLHDTG GSEENPSPEV VNATEPLGEA ETSLCVTSTD GVENSKGRKR QGGDQSDVVE QQKDSFSVAH
0301: LPSQVRSIIE HLWENEAPLC TFFCDIQSQH RNTSGKVAGP SMFFLDSILV PPVKFRPPAK GGDSIMEHPH TVLLGKVIQA NIALGNAHIN RAGRSKIISR
0401: LMDLQQSVNV LFDSKTASGP GQKDVGSGIC QMLEKKEGIF RQKMMGKRVN FACRSVISPD PYLSVNEIGI PPYFASRLTY PERLTPWNAV KMRDAVINGP
0501: ENHPGAISFA DRIATVKLPS NKKMRVAISR KLPSSRGAVT QSGRNNEYEF EGKVVYRHLQ DGDVVLVNRQ PTLHKPSIMA HVVRVLKGEK TLRMHYANCS
0601: TYNADFDGDE MNVHFPQDEI SRAEAYNIVN ANEQYIVPTK GDTVRGLIQD HIVGAVILTM KNTFLSLHEF NQLLYGSGVF AAGPAPTSGN HSNKVSIVDF
0701: EGVVQTVLPA VWKPKPLWTG KQVITALLNH LTNGCPPCTV KNKGKIPYAY FLSESRLVEY QSREEQEDRT AENEFLIWKN ELVRGVIDKA QFGKFGLVHT
0801: IQELYGSNKA GILLSALSRL FTIFLQLHGF TCGIDDLVIL PHYDIRRKEE LEGDDVGEEA HCDFVKFKRG EIGPLELQLE IEKAISSNKE VATAALDMKM
0901: KNKLANKGSQ FNKELLLKGL LKPFPRNCIA LMTITGAKGS TVNFQQISSY LGQQELEGKR VPRMVSGKTL PCFPAWDCAS RAGGYVSDRF LSGLRPQEYY
1001: FHCMAGREGL VDTAVKTSRS GYLQRCLIKN LESLKVCYDY TVRDADGSII QFYYGEDGVD VHRTSFLKNF KALKNNQETI CQKLRHGCKL NSYIEKLPDG
1101: LGEKVKHFWE SKTKKLEKKL GMLVKKEEMV KQLKEEEADF LELVGQKYFS SLADSGEPVG VLAGQSVGEP STQMTLNTFH LAGRGEMNVT LGIPRLQEIL
1201: MTASEAIKTP IMTCPFLGWK SKNDAQSLLA KVKKITVADM IESMEVKLLP LSIYNHQVSQ LYKLTVKLKK HDFVSSEDCE YTLKFVFLRE LEDAIESHLA
1301: LLSKINGIQN FKTSSESVDS DETEENASST RREEEMLDDD DDDEDERTED LSSDAQKRKQ QTTDEMDYDD DEDEAEAEAE ATAEIEDEKS EQTDEIDNGD
1401: EEENGDRGNE EHTSKLQSTE EDISNTKTSK SKTKTTVKQK KKKERRSKKD SDRCVFVDVE GLHFEVHFRF VNEPHILLAQ VAQKTAKKVY VKNSGKIDQC
1501: RMVKYEVTEN TVMWDENQTK QQRQDSDSAY WALKAAGVDF GTFWEMQDDL DVTRIYTNNI RAMLNTYGVE AARASILREV KTVFGIYGVE IDFRHLSLIA
1601: DFMTHTGGYQ PMSRHGSISE SLSPFLKMSF ETASKFIVEA AAHGLTDNLE TPSSRICLGL PVKMGTGCFD IMQELDI
0101: YCFHFRASRA EVEKCVSELE LIAKGDVVGA KMIDALSPDN STDREESEGS HMSCTMDDLN VRDHCEYNKR PSWDNFQFTE AMAVIDRILK TKTEKCSNCK
0201: AKNPKIRKPS FGRFHMDISN KQIRENYINS GRRFNLHDTG GSEENPSPEV VNATEPLGEA ETSLCVTSTD GVENSKGRKR QGGDQSDVVE QQKDSFSVAH
0301: LPSQVRSIIE HLWENEAPLC TFFCDIQSQH RNTSGKVAGP SMFFLDSILV PPVKFRPPAK GGDSIMEHPH TVLLGKVIQA NIALGNAHIN RAGRSKIISR
0401: LMDLQQSVNV LFDSKTASGP GQKDVGSGIC QMLEKKEGIF RQKMMGKRVN FACRSVISPD PYLSVNEIGI PPYFASRLTY PERLTPWNAV KMRDAVINGP
0501: ENHPGAISFA DRIATVKLPS NKKMRVAISR KLPSSRGAVT QSGRNNEYEF EGKVVYRHLQ DGDVVLVNRQ PTLHKPSIMA HVVRVLKGEK TLRMHYANCS
0601: TYNADFDGDE MNVHFPQDEI SRAEAYNIVN ANEQYIVPTK GDTVRGLIQD HIVGAVILTM KNTFLSLHEF NQLLYGSGVF AAGPAPTSGN HSNKVSIVDF
0701: EGVVQTVLPA VWKPKPLWTG KQVITALLNH LTNGCPPCTV KNKGKIPYAY FLSESRLVEY QSREEQEDRT AENEFLIWKN ELVRGVIDKA QFGKFGLVHT
0801: IQELYGSNKA GILLSALSRL FTIFLQLHGF TCGIDDLVIL PHYDIRRKEE LEGDDVGEEA HCDFVKFKRG EIGPLELQLE IEKAISSNKE VATAALDMKM
0901: KNKLANKGSQ FNKELLLKGL LKPFPRNCIA LMTITGAKGS TVNFQQISSY LGQQELEGKR VPRMVSGKTL PCFPAWDCAS RAGGYVSDRF LSGLRPQEYY
1001: FHCMAGREGL VDTAVKTSRS GYLQRCLIKN LESLKVCYDY TVRDADGSII QFYYGEDGVD VHRTSFLKNF KALKNNQETI CQKLRHGCKL NSYIEKLPDG
1101: LGEKVKHFWE SKTKKLEKKL GMLVKKEEMV KQLKEEEADF LELVGQKYFS SLADSGEPVG VLAGQSVGEP STQMTLNTFH LAGRGEMNVT LGIPRLQEIL
1201: MTASEAIKTP IMTCPFLGWK SKNDAQSLLA KVKKITVADM IESMEVKLLP LSIYNHQVSQ LYKLTVKLKK HDFVSSEDCE YTLKFVFLRE LEDAIESHLA
1301: LLSKINGIQN FKTSSESVDS DETEENASST RREEEMLDDD DDDEDERTED LSSDAQKRKQ QTTDEMDYDD DEDEAEAEAE ATAEIEDEKS EQTDEIDNGD
1401: EEENGDRGNE EHTSKLQSTE EDISNTKTSK SKTKTTVKQK KKKERRSKKD SDRCVFVDVE GLHFEVHFRF VNEPHILLAQ VAQKTAKKVY VKNSGKIDQC
1501: RMVKYEVTEN TVMWDENQTK QQRQDSDSAY WALKAAGVDF GTFWEMQDDL DVTRIYTNNI RAMLNTYGVE AARASILREV KTVFGIYGVE IDFRHLSLIA
1601: DFMTHTGGYQ PMSRHGSISE SLSPFLKMSF ETASKFIVEA AAHGLTDNLE TPSSRICLGL PVKMGTGCFD IMQELDI
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.