Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06084 | Canola | nucleus | 96.61 | 97.5 |
| CDY65464 | Canola | nucleus | 48.79 | 79.94 |
| CDX67702 | Canola | nucleus | 77.0 | 78.33 |
| AT3G57660.1 | Thale cress | nucleus | 80.72 | 74.19 |
| CDY65462 | Canola | nucleus | 16.74 | 71.79 |
| KRH71957 | Soybean | nucleus | 45.86 | 54.66 |
| KRH33046 | Soybean | nucleus | 58.7 | 54.57 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 58.89 | 53.46 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 48.99 | 50.2 |
| Solyc10g080350.1.1 | Tomato | nucleus | 53.94 | 49.37 |
| Os06t0612200-01 | Rice | nucleus | 7.56 | 48.95 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.36 | 45.69 |
| Zm00001d029055_P010 | Maize | nucleus | 48.08 | 43.67 |
| KXG22455 | Sorghum | nucleus | 48.14 | 42.67 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 45.67 | 42.31 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 45.54 | 42.24 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 45.6 | 42.02 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 45.73 | 39.48 |
| CDY09230 | Canola | nucleus | 25.02 | 28.03 |
| CDY71816 | Canola | cytosol | 4.04 | 21.75 |
| CDY50743 | Canola | nucleus | 10.55 | 19.85 |
| CDY08876 | Canola | nucleus | 20.91 | 19.83 |
| CDX93859 | Canola | nucleus | 15.11 | 16.03 |
| CDY32191 | Canola | nucleus | 15.05 | 16.0 |
| CDY49206 | Canola | nucleus | 15.18 | 15.96 |
| CDX69166 | Canola | cytosol | 25.86 | 15.04 |
| CDX75527 | Canola | nucleus | 25.54 | 14.43 |
| CDY60335 | Canola | nucleus | 15.57 | 12.79 |
| CDY07630 | Canola | nucleus | 12.25 | 8.2 |
| CDY68589 | Canola | cytosol | 2.67 | 7.69 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.1.1 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | GO:A0A078C510 | EnsemblPlants:CDX72007 | ProteinID:CDX72007 |
| ProteinID:CDX72007.1 | ncoils:Coil | InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00155782001 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EE933B | SEG:seg | : |
Description
BnaC08g28670D
Coordinates
chrLK031795:-:1782823..1790756
Molecular Weight (calculated)
172114.0 Da
IEP (calculated)
9.064
GRAVY (calculated)
-0.340
Length
1535 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAQTTTEGAS QVVESVRFSF MTEEDVRKHS VLQVTKPILL DNVGRPVPGG LYDPLMGPME DDRSKCKTCD QRNLDCPGHC GRIELVRPIY HPLLFNLLFI
0101: FLQRTCFFCH HFMVKKEVVA RCVSQLKLIM KGDVIAAKQL TLKPTDSSPG ECEDSDMGKQ RWTSLQFAEA TDVINQFLRL KSRKCESCKA KPPKLEKPIF
0201: GWVRLDGMSA IDIGANVMRG VKAKKSANSG EDSDDGDESG ISGLHEVEDG AKKKKGKSSK AAKDYGDLKK ASKRDLLPIE VKEILEGLWD NEYEFCSFIG
0301: DLWKSGSEKM DYSMFFLGSV LVPPTKFRAP TKGGDSVTEH AHTAGLNKVL EANIALGNAC TNKLGLSKIV SIWMNLQETV NVLFDSKTAT VKSQREGTGI
0401: CQLLEKKEGL FRQKMMGKRV NHACRSVISP DPFIAVNDIG IPPCFALKLS YPERVTPWNV EKLRQAIING PDVHPGATHY SDKVSTMKLP PTKKARIAIA
0501: RKLLSSRGVN TELGKTCDVN FECKTVYRHM QDGDVVLVNR QPTLHKPSIM AHIVRVLKGE KTLRLHYANC STYNADFDGD EMNVHFPQDE ISRSEAYNIV
0601: NANNQYARPS NGDPLRALIQ DHIVSSVLLT KGDTFLDKEE FNQLLFSSGV TDMVLSSFSG RSGKKVTQSA SNAELLTVTP AILKPVPLWT GKQVITAVLN
0701: EITKGHPPFS VEKSTKLPVD FFKCRSREAK SKSGESSKKS KKHDFNEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GPNAAGNLLS VFSRLFTVFL
0801: QTQGFTCGVD DLIILKDVDE KRTKQLQECE GVGEKVLRKT FGVDVNAQID PQDMKSRIER VLYEDGELAL ASLDRSVVSE LNQCSGKGVM NDLLSDGLLK
0901: TPGTNCISLM TISGAKGSKV NFQQISSHLG QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLRPQEYYFH CMAGREGLVD TAVKTSRSGY
1001: LQRCLMKNLE SLKVNYDCTV RDADGSIIQF QYGEDGVDVH RSSFIEKFQE MTLNQDMFLE RCSEDMLSGS SSYITDLPIT LKKGAEKFVE AMPMKERIAS
1101: KMVRQEDLLK LVKSKFFASL AQPGEPVGVL AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT AAADIKTPIM TCPLLKGKTN DDASQITDKL
1201: RKITVADIIK SMEVSVIPFA VHGGEVCSIH KLKINLYKPE HYPKHTDITE EDWEETMTMH RNGRSKQQMS RIMRRVMTMR RMNRLQLVEW LTLRWMMMKM
1301: RTEKLARKIP RRRIMKIPWK RRKRHIFAEG KGKTFEVHFK FHKNEPHILL AQVAQKTAQK VYIQNLGKIE RCTVANCAEI SNEEKKASPA LHASGVDFAG
1401: LWEFQDKLDV RYLYSNSIHD MLNTFGVEAA RETIIREINH VFKSYGISVS IRHLNLIADY MTFSGGYRPM SRMGGIAEST SPFCRMTFET ATKFIVQAAT
1501: YGEVDRLETP SARICLGLPA LTGTGCFDLL QRMDL
0101: FLQRTCFFCH HFMVKKEVVA RCVSQLKLIM KGDVIAAKQL TLKPTDSSPG ECEDSDMGKQ RWTSLQFAEA TDVINQFLRL KSRKCESCKA KPPKLEKPIF
0201: GWVRLDGMSA IDIGANVMRG VKAKKSANSG EDSDDGDESG ISGLHEVEDG AKKKKGKSSK AAKDYGDLKK ASKRDLLPIE VKEILEGLWD NEYEFCSFIG
0301: DLWKSGSEKM DYSMFFLGSV LVPPTKFRAP TKGGDSVTEH AHTAGLNKVL EANIALGNAC TNKLGLSKIV SIWMNLQETV NVLFDSKTAT VKSQREGTGI
0401: CQLLEKKEGL FRQKMMGKRV NHACRSVISP DPFIAVNDIG IPPCFALKLS YPERVTPWNV EKLRQAIING PDVHPGATHY SDKVSTMKLP PTKKARIAIA
0501: RKLLSSRGVN TELGKTCDVN FECKTVYRHM QDGDVVLVNR QPTLHKPSIM AHIVRVLKGE KTLRLHYANC STYNADFDGD EMNVHFPQDE ISRSEAYNIV
0601: NANNQYARPS NGDPLRALIQ DHIVSSVLLT KGDTFLDKEE FNQLLFSSGV TDMVLSSFSG RSGKKVTQSA SNAELLTVTP AILKPVPLWT GKQVITAVLN
0701: EITKGHPPFS VEKSTKLPVD FFKCRSREAK SKSGESSKKS KKHDFNEDKL LIRKNEFVRG VIDKAQFADY GLVHTVHELY GPNAAGNLLS VFSRLFTVFL
0801: QTQGFTCGVD DLIILKDVDE KRTKQLQECE GVGEKVLRKT FGVDVNAQID PQDMKSRIER VLYEDGELAL ASLDRSVVSE LNQCSGKGVM NDLLSDGLLK
0901: TPGTNCISLM TISGAKGSKV NFQQISSHLG QQDLEGKRVP RMVSGKTLPC FHPWDWSPRA GGFISDRFLS GLRPQEYYFH CMAGREGLVD TAVKTSRSGY
1001: LQRCLMKNLE SLKVNYDCTV RDADGSIIQF QYGEDGVDVH RSSFIEKFQE MTLNQDMFLE RCSEDMLSGS SSYITDLPIT LKKGAEKFVE AMPMKERIAS
1101: KMVRQEDLLK LVKSKFFASL AQPGEPVGVL AAQSVGEPST QMTLNTFHLA GRGEMNVTLG IPRLQEILMT AAADIKTPIM TCPLLKGKTN DDASQITDKL
1201: RKITVADIIK SMEVSVIPFA VHGGEVCSIH KLKINLYKPE HYPKHTDITE EDWEETMTMH RNGRSKQQMS RIMRRVMTMR RMNRLQLVEW LTLRWMMMKM
1301: RTEKLARKIP RRRIMKIPWK RRKRHIFAEG KGKTFEVHFK FHKNEPHILL AQVAQKTAQK VYIQNLGKIE RCTVANCAEI SNEEKKASPA LHASGVDFAG
1401: LWEFQDKLDV RYLYSNSIHD MLNTFGVEAA RETIIREINH VFKSYGISVS IRHLNLIADY MTFSGGYRPM SRMGGIAEST SPFCRMTFET ATKFIVQAAT
1501: YGEVDRLETP SARICLGLPA LTGTGCFDLL QRMDL
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.