Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67702 | Canola | nucleus | 93.49 | 58.05 |
| CDY06084 | Canola | nucleus | 80.04 | 49.31 |
| CDX72007 | Canola | nucleus | 79.94 | 48.79 |
| AT3G57660.1 | Thale cress | nucleus | 82.6 | 46.35 |
| KRH71957 | Soybean | nucleus | 47.6 | 34.63 |
| KRH33046 | Soybean | nucleus | 59.23 | 33.62 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 58.27 | 32.29 |
| Solyc10g080350.1.1 | Tomato | nucleus | 55.6 | 31.07 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 48.24 | 30.17 |
| Os06t0612200-01 | Rice | nucleus | 7.58 | 29.96 |
| Zm00001d029055_P010 | Maize | nucleus | 50.59 | 28.05 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.16 | 27.78 |
| KXG22455 | Sorghum | nucleus | 50.69 | 27.42 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 48.24 | 27.13 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 47.92 | 27.13 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 47.92 | 27.1 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 48.24 | 25.42 |
| CDY09230 | Canola | nucleus | 24.87 | 17.01 |
| CDY08876 | Canola | nucleus | 23.59 | 13.65 |
| CDX93859 | Canola | nucleus | 14.94 | 9.68 |
| CDY50743 | Canola | nucleus | 8.32 | 9.56 |
| CDX69166 | Canola | cytosol | 26.89 | 9.55 |
| CDY49206 | Canola | nucleus | 14.73 | 9.45 |
| CDY32191 | Canola | nucleus | 14.51 | 9.42 |
| CDX75527 | Canola | nucleus | 26.68 | 9.2 |
| CDY60335 | Canola | nucleus | 14.41 | 7.22 |
| CDY68589 | Canola | cytosol | 3.31 | 5.82 |
| CDY07630 | Canola | nucleus | 10.57 | 4.32 |
| CDY65462 | Canola | nucleus | 1.28 | 3.35 |
| CDY71816 | Canola | cytosol | 0.96 | 3.16 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | MapMan:15.1.1.1 | Gene3D:2.20.25.410 |
| Gene3D:2.40.40.20 | Gene3D:3.30.70.2850 | GO:A0A078JFI7 | UniProt:A0A078JFI7 | EnsemblPlants:CDY65464 | ProteinID:CDY65464 |
| ProteinID:CDY65464.1 | InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00046642001 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI0004EDC751 | SEG:seg | : | : | : | : |
Description
BnaAnng20540DBnaAnng20540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFI7]
Coordinates
chrLK034797:+:19152..24015
Molecular Weight (calculated)
106015.0 Da
IEP (calculated)
7.276
GRAVY (calculated)
-0.507
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTKKKRRRT TKHTTLPTLH KPSIMAHIVR VLEGEKTLRL YYANCRYTYN ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGDP LRALIQDHIV
101: SSVLLTKGDT FMDKDEFNQL LFSSGVTDML LTVTPAILKP VPLWTGKQVI TAVLNVITKG HPPFSVEKAT KLPVDFFKRR TRESNKNKSW KHDLDEDKLL
201: IRKNEFVRGV IDKAQFADYG LVHTMHELYG LNAAGNLLSV FSRLFTVFLQ IHGFTCGVDD LIILKDVDEE RTKQLQECEG VGEKVLRKTF GIDVNAQIDP
301: QDMKSSIERL LYEDGEPALA SLDRRIVSEL NQCSGKGVMN DLLSDGLLKT PGRNCISLMT ISGAKGSKVN FQQISSHLGQ QDLEGKRVPR MVSGKTLPCF
401: HPWDWSPRAG GFISDRFLSG LKPQEYYFHC MAGREGLVDT AVKTSLSGYL QRCLMKNLES LKVNYDCTVR DADGSIIQFQ YGEDGVDVHR SSFIEKFKEL
501: ALNQDMILER CSEDMLSGFS SYITDLPITL EKRAEKLVES MPMNERIATK MVRQEDLLKL VKSKFFASLA QPGEPVGVLA AQSVGEPSTQ MTLNTFHLAG
601: RGEMNVTLGI PRLQEILMTA SANIKTPIMT CPLLKGKTKD DASHITDKLR KITVADIIKK HYPKHTDITD EDWQETMKVR YLRKLEDAIQ KHMTMLCRIR
701: GIKVKKVTGP KAGNDTKNND SASGKQTQDD DDSASGKQNQ DDDDDDDDDD DDSANDDADD DDDDDDEARK RLGNPKKKKR EIFVRHKKDR HIFVEGKGAT
801: FEVHFKFLSK KPHMLLAPVA QKTAQKVYIH NYGRIERCTL ANCEDISNEE KKAWSALHAS GVDFSDIWEF QDKLDVREIN HVFKSYGILV SFRHLNLIAD
901: YMTFSGGYRP MSRFGGIAES TSPFCRMTFE TATKFIV
101: SSVLLTKGDT FMDKDEFNQL LFSSGVTDML LTVTPAILKP VPLWTGKQVI TAVLNVITKG HPPFSVEKAT KLPVDFFKRR TRESNKNKSW KHDLDEDKLL
201: IRKNEFVRGV IDKAQFADYG LVHTMHELYG LNAAGNLLSV FSRLFTVFLQ IHGFTCGVDD LIILKDVDEE RTKQLQECEG VGEKVLRKTF GIDVNAQIDP
301: QDMKSSIERL LYEDGEPALA SLDRRIVSEL NQCSGKGVMN DLLSDGLLKT PGRNCISLMT ISGAKGSKVN FQQISSHLGQ QDLEGKRVPR MVSGKTLPCF
401: HPWDWSPRAG GFISDRFLSG LKPQEYYFHC MAGREGLVDT AVKTSLSGYL QRCLMKNLES LKVNYDCTVR DADGSIIQFQ YGEDGVDVHR SSFIEKFKEL
501: ALNQDMILER CSEDMLSGFS SYITDLPITL EKRAEKLVES MPMNERIATK MVRQEDLLKL VKSKFFASLA QPGEPVGVLA AQSVGEPSTQ MTLNTFHLAG
601: RGEMNVTLGI PRLQEILMTA SANIKTPIMT CPLLKGKTKD DASHITDKLR KITVADIIKK HYPKHTDITD EDWQETMKVR YLRKLEDAIQ KHMTMLCRIR
701: GIKVKKVTGP KAGNDTKNND SASGKQTQDD DDSASGKQNQ DDDDDDDDDD DDSANDDADD DDDDDDEARK RLGNPKKKKR EIFVRHKKDR HIFVEGKGAT
801: FEVHFKFLSK KPHMLLAPVA QKTAQKVYIH NYGRIERCTL ANCEDISNEE KKAWSALHAS GVDFSDIWEF QDKLDVREIN HVFKSYGILV SFRHLNLIAD
901: YMTFSGGYRP MSRFGGIAES TSPFCRMTFE TATKFIV
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.