Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G000370.1 | Barley | extracellular | 10.88 | 39.19 |
| CDY49206 | Canola | nucleus | 98.87 | 36.1 |
| CDY32191 | Canola | nucleus | 90.62 | 33.45 |
| CDX93859 | Canola | nucleus | 90.62 | 33.38 |
| Os09t0555200-01 | Rice | cytosol | 19.7 | 33.02 |
| Os04t0572600-01 | Rice | cytosol | 27.2 | 32.15 |
| Zm00001d031459_P001 | Maize | cytosol | 19.51 | 31.33 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 74.3 | 27.25 |
| Solyc08g080210.2.1 | Tomato | nucleus | 41.28 | 18.24 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 46.34 | 17.24 |
| KRH27976 | Soybean | nucleus | 42.96 | 15.75 |
| KRH77477 | Soybean | nucleus | 42.03 | 15.37 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 33.4 | 12.49 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 33.4 | 12.49 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 34.33 | 12.33 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 32.83 | 12.26 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 33.02 | 11.75 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 36.4 | 11.59 |
| CDY60335 | Canola | nucleus | 20.64 | 5.89 |
| Zm00001d031457_P009 | Maize | nucleus | 9.38 | 4.6 |
| CDY08876 | Canola | nucleus | 12.95 | 4.26 |
| CDY09230 | Canola | nucleus | 10.13 | 3.94 |
| CDY65464 | Canola | nucleus | 5.82 | 3.31 |
| CDX67702 | Canola | nucleus | 7.88 | 2.78 |
| CDX72007 | Canola | nucleus | 7.69 | 2.67 |
| CDX75527 | Canola | nucleus | 13.51 | 2.65 |
| CDY06084 | Canola | nucleus | 7.5 | 2.63 |
| CDX69166 | Canola | cytosol | 12.95 | 2.61 |
| CDY07630 | Canola | nucleus | 4.13 | 0.96 |
| CDY50743 | Canola | nucleus | 0.56 | 0.37 |
| CDY71816 | Canola | cytosol | 0.0 | 0.0 |
| CDY65462 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY68589 | EnsemblPlantsGene:GSBRNA2T00075975001 | Gene3D:3.10.450.40 | KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF40 | PFAM:PF11523 | ProteinID:CDY68589 | ProteinID:CDY68589.1 | SUPFAM:SSF64484 | UniParc:UPI0004EEEF82 |
| UniProt:A0A078JP78 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng59660DBnaCnng59660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP78]
Coordinates
chrLK037614:-:2657..5337
Molecular Weight (calculated)
59895.4 Da
IEP (calculated)
9.043
GRAVY (calculated)
-0.245
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLYLSETLS KKKHGFEYGA LDIKSHLEKL CFSEIVSTSM MIFSPRTNTR MPMSSWVCHF HISKKVLKQN QLDLESVVSS LNKQYANRKK ELKLDVIDLD
101: IQSKNHCSWD DKAMEDDRVC ITVTVLEASR HDYLELDAIR LVLIPFLLDS PVKGYREIKK VDILWVDRPK APQRNKKGFA GELFLKVTMH GVRGKRSFWS
201: ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVSDT GKAMLREHLL LVADSLSVTG EFVALNPKGW SRQRQAESTP APFAQACFSS
301: PSQCFLKAAK EGVTDELEGS IDALAWGKVP SFGTGDQFEI IISPKNHGFS TPVVDVYGFL SRTATLPKKK AVRATSSSLP KSDEFTVQPF PLLDTALSKA
401: VKTLDGKGLT RSQLRMIFTW DDMEKLSRSL KRILYNYEID ATLNELDGRL LMMALLFHPN RDEKIGPGFK GIKVANSKHG NARCFEVVRT DGTTEDFSYH
501: KCVLGATEII APKRVNFYKA KYLRNGTVQP GAV
101: IQSKNHCSWD DKAMEDDRVC ITVTVLEASR HDYLELDAIR LVLIPFLLDS PVKGYREIKK VDILWVDRPK APQRNKKGFA GELFLKVTMH GVRGKRSFWS
201: ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVSDT GKAMLREHLL LVADSLSVTG EFVALNPKGW SRQRQAESTP APFAQACFSS
301: PSQCFLKAAK EGVTDELEGS IDALAWGKVP SFGTGDQFEI IISPKNHGFS TPVVDVYGFL SRTATLPKKK AVRATSSSLP KSDEFTVQPF PLLDTALSKA
401: VKTLDGKGLT RSQLRMIFTW DDMEKLSRSL KRILYNYEID ATLNELDGRL LMMALLFHPN RDEKIGPGFK GIKVANSKHG NARCFEVVRT DGTTEDFSYH
501: KCVLGATEII APKRVNFYKA KYLRNGTVQP GAV
0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.