Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G108700.1 | Wheat | nucleus | 96.71 | 96.84 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 96.5 | 96.63 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 9.81 | 94.59 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 94.32 | 89.85 |
| Os09t0555200-01 | Rice | cytosol | 14.86 | 66.67 |
| Zm00001d031457_P009 | Maize | nucleus | 50.53 | 66.27 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 68.04 | 65.43 |
| Os04t0572600-01 | Rice | cytosol | 20.67 | 65.41 |
| Zm00001d031459_P001 | Maize | cytosol | 13.74 | 59.04 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 41.28 | 41.1 |
| Solyc08g080210.2.1 | Tomato | nucleus | 33.15 | 39.22 |
| KRH27976 | Soybean | nucleus | 38.75 | 38.03 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 44.36 | 37.81 |
| KRH77477 | Soybean | nucleus | 38.47 | 37.68 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 37.07 | 36.41 |
| Bra027611.1-P | Field mustard | nucleus | 36.44 | 36.04 |
| CDX93859 | Canola | nucleus | 36.51 | 36.01 |
| CDY49206 | Canola | nucleus | 36.72 | 35.89 |
| CDY32191 | Canola | nucleus | 36.16 | 35.73 |
| CDY50743 | Canola | nucleus | 20.25 | 35.42 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 11.07 | 33.05 |
| CDY68589 | Canola | cytosol | 12.26 | 32.83 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 12.33 | 20.28 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 20.46 | 18.96 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 20.32 | 18.2 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 17.24 | 17.6 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 17.03 | 17.42 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 18.5 | 17.21 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 23.48 | 17.2 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 18.57 | 14.58 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 18.71 | 14.42 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 18.22 | 14.27 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 18.36 | 14.09 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 16.4 | 14.05 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:GO:0000418 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010495 | GO:GO:0016740 | GO:GO:0030422 |
| GO:GO:0031047 | GO:GO:0040029 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| EnsemblPlantsGene:TraesCS1B01G123600 | EnsemblPlants:TraesCS1B01G123600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1B:+:150359056..150370346
Molecular Weight (calculated)
158386.0 Da
IEP (calculated)
6.885
GRAVY (calculated)
-0.216
Length
1427 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEPNAEMGM PTGELKGIAF YLMTNTEMEK SSSASIIEPS DVSSAKLGLP NGAPQCETCG AQTVRECDGH SGVIKLPATV FNPHLFEEVV QLLNQICPGC
0101: HTPKQNRDSK RSDGATSQAT CKYCSKDGTK QYPDVIFKTL KSPRITLSKA KLLRDPDFMD KISLTAEVAD SVTGSPEVLP LDYWDFVPHH HPPQSNMTKI
0201: LLSPYQASHI LEQLDPELFS RFASKPELIF LSCLPVTPNF HRVAELPYGF SDGPRLAYDD LTKAYKRTVD VGRKLDDFRQ HPQFSVLASS LVTSRVVECL
0301: KLSKLHSKKT DKESSTDTHG MKWLKDAILS KRSDNAFRGT MVGDPKIRLH EIGVPVDLAS NLVVSEHVNS YNFDSINSKC NSYLLANEKL VIKRSGKTII
0401: VRKPNQLVIG DTVHRLLQDG DLILINRPPS VHQHSLIGLS AKLLPVQSVL SINPLCCAPL AGDFDGDCLH GYVPQSIQSR VELGELVSLS HQLLNAQDGR
0501: SLVSLTHDSL AAAYLLTSSE VLLKKTEVQQ FQMLLCHPLS PTPGPAIMKS IHSHGPLWTG KQLFSMLLPS DMSFNIEPKV HIIDGEVLAC PSESFWLQNS
0601: ISGLFSVMFK QYGDKALELL SSAQDVLCEF LTMRGLSVSL SDIYLFPDHD SRRKLADGVN LALDDAEEAF RIKQILLSPD SIPILKCYDD SADLSQSYEQ
0701: SSFIRSNLPI IKSSIMAFKS VFSDLQKMVQ QHTAKNNSMM MMTNAGSKGS MLKFVQQTAC VGLQLPANRF PFRIPSELSC ASWNRHKSEG TGECLGGQNL
0801: YAVIRNSFAG GLNPLECLLH SISGRANFFS ENADVPGTLT RKLMYHLRDV YVAYDGTVRS SYGQQIMQFT YDTAEDMCSD RNPEGELGAP VGSWAACSIS
0901: EAAYGALDHP VNSLEESPLM NLQDVLKCQK GGTSMDHVGL LFLSKHLKKY RYGLEYASLE VKDHLEPVNF SDLVDTVMIL HGGCGIQSTK GSPWITHFHL
1001: SQEMMMKKRL GLRLVVEEIT EQYNAKRDKL NIPKVYISKG KCSADNECGN RQTCCITVVT QDDSDSMSLL ETIKKRVIPN LLALLVKGFL EFKKVEIQCQ
1101: EDSELIVKVI MSEEHCKSVK FWATLQKSCI AIMELIDWER SRPGSVYDIF CSYGIDSAWK YFVESLRSKT DDIGRNICRE HLLVVANCLS VSGQFHGLSS
1201: QGLKQQRTRL SISSPFSEAC FSRPAHTFIN AAKQSSVDNL CGTVDAMAWG KEPTTGTSGP FKIIYSGKAH APIPNENIYD FLNSPEVRQA PGEAFLNGST
1301: ISVEQDFLVA TVGIWDNIID MRTCLQNMLR EYQLNECVGE LDKSRVIEAL RFHPRGREKI GAGIKDIKIG HHPSHPGTRC FIMVRDDGTT EDFSYKKCVQ
1401: AAADSISPEL GRYVERILRN RAVSSQC
0101: HTPKQNRDSK RSDGATSQAT CKYCSKDGTK QYPDVIFKTL KSPRITLSKA KLLRDPDFMD KISLTAEVAD SVTGSPEVLP LDYWDFVPHH HPPQSNMTKI
0201: LLSPYQASHI LEQLDPELFS RFASKPELIF LSCLPVTPNF HRVAELPYGF SDGPRLAYDD LTKAYKRTVD VGRKLDDFRQ HPQFSVLASS LVTSRVVECL
0301: KLSKLHSKKT DKESSTDTHG MKWLKDAILS KRSDNAFRGT MVGDPKIRLH EIGVPVDLAS NLVVSEHVNS YNFDSINSKC NSYLLANEKL VIKRSGKTII
0401: VRKPNQLVIG DTVHRLLQDG DLILINRPPS VHQHSLIGLS AKLLPVQSVL SINPLCCAPL AGDFDGDCLH GYVPQSIQSR VELGELVSLS HQLLNAQDGR
0501: SLVSLTHDSL AAAYLLTSSE VLLKKTEVQQ FQMLLCHPLS PTPGPAIMKS IHSHGPLWTG KQLFSMLLPS DMSFNIEPKV HIIDGEVLAC PSESFWLQNS
0601: ISGLFSVMFK QYGDKALELL SSAQDVLCEF LTMRGLSVSL SDIYLFPDHD SRRKLADGVN LALDDAEEAF RIKQILLSPD SIPILKCYDD SADLSQSYEQ
0701: SSFIRSNLPI IKSSIMAFKS VFSDLQKMVQ QHTAKNNSMM MMTNAGSKGS MLKFVQQTAC VGLQLPANRF PFRIPSELSC ASWNRHKSEG TGECLGGQNL
0801: YAVIRNSFAG GLNPLECLLH SISGRANFFS ENADVPGTLT RKLMYHLRDV YVAYDGTVRS SYGQQIMQFT YDTAEDMCSD RNPEGELGAP VGSWAACSIS
0901: EAAYGALDHP VNSLEESPLM NLQDVLKCQK GGTSMDHVGL LFLSKHLKKY RYGLEYASLE VKDHLEPVNF SDLVDTVMIL HGGCGIQSTK GSPWITHFHL
1001: SQEMMMKKRL GLRLVVEEIT EQYNAKRDKL NIPKVYISKG KCSADNECGN RQTCCITVVT QDDSDSMSLL ETIKKRVIPN LLALLVKGFL EFKKVEIQCQ
1101: EDSELIVKVI MSEEHCKSVK FWATLQKSCI AIMELIDWER SRPGSVYDIF CSYGIDSAWK YFVESLRSKT DDIGRNICRE HLLVVANCLS VSGQFHGLSS
1201: QGLKQQRTRL SISSPFSEAC FSRPAHTFIN AAKQSSVDNL CGTVDAMAWG KEPTTGTSGP FKIIYSGKAH APIPNENIYD FLNSPEVRQA PGEAFLNGST
1301: ISVEQDFLVA TVGIWDNIID MRTCLQNMLR EYQLNECVGE LDKSRVIEAL RFHPRGREKI GAGIKDIKIG HHPSHPGTRC FIMVRDDGTT EDFSYKKCVQ
1401: AAADSISPEL GRYVERILRN RAVSSQC
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.