Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 55.22 | 46.48 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 5.56 | 45.27 |
| KRH27976 | Soybean | nucleus | 53.15 | 44.09 |
| KRH77477 | Soybean | nucleus | 52.82 | 43.72 |
| CDY68589 | Canola | cytosol | 18.24 | 41.28 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 15.67 | 39.54 |
| Bra027611.1-P | Field mustard | nucleus | 46.77 | 39.09 |
| CDY32191 | Canola | nucleus | 46.77 | 39.06 |
| CDX93859 | Canola | nucleus | 46.85 | 39.05 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 47.01 | 39.02 |
| CDY49206 | Canola | nucleus | 46.93 | 38.77 |
| Os09t0555200-01 | Rice | cytosol | 9.54 | 36.16 |
| Os04t0572600-01 | Rice | cytosol | 13.02 | 34.81 |
| Zm00001d031459_P001 | Maize | cytosol | 9.45 | 34.34 |
| CDY50743 | Canola | nucleus | 23.13 | 34.19 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 39.55 | 33.47 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 39.39 | 33.33 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 39.22 | 33.15 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 40.71 | 33.09 |
| Zm00001d031457_P009 | Maize | nucleus | 29.77 | 33.0 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 39.55 | 31.84 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 41.96 | 30.23 |
| Solyc01g096390.2.1 | Tomato | nucleus | 23.63 | 16.98 |
| Solyc11g072730.1.1 | Tomato | nucleus | 17.0 | 14.75 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 2.9 | 13.26 |
| Solyc10g080350.1.1 | Tomato | nucleus | 16.67 | 11.99 |
| Solyc02g083350.2.1 | Tomato | nucleus | 18.16 | 11.86 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | MapMan:15.1.4.1 | Gene3D:2.40.40.20 |
| Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:GO:0000418 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010495 |
| GO:GO:0016740 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 | InterPro:IPR038120 | UniProt:K4CP21 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | EnsemblPlantsGene:Solyc08g080210.2 | EnsemblPlants:Solyc08g080210.2.1 | UniParc:UPI000276B708 | SEG:seg | : |
Description
No Description!
Coordinates
chr8:-:63534882..63542083
Molecular Weight (calculated)
134097.0 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.119
Length
1206 amino acids
Sequence
(BLAST)
(BLAST)
0001: MIFDESNRLY RKLIDFRGTA NDLSMCVLDR IKVSKIRADR SVINDPNAPA TGLKYVKELV LAKRTNHAFR MVVVGDPNIE LGEIGIPCHV AENLHMAETL
0101: SLRNWERMTD LCDLMILQRG GILVRRNGVL VRISVMDGLQ KGDIIHRPLV DGDVVMINRP PSIHQHSLIA LSVRILPINS VLSINPLVCS PFRGDFDGDC
0201: LHGYIPQSID STIELSELVA LKQQLLDGQN GQNLLSLSHD SLTAAHLILE PGVFLDRFQM QQLQMFCPRQ LGMTAIVKAP PGNICYWTGK QLFSLLLPSD
0301: LEYVFPSNGV CISEGEIVTS SGGSSWLRDA SDNLFYSLVK HNGGDTLDLL YAAQTVLCEW LSMRGLSVSL SDLYISADSY SRENMIDEVC SGLQEAERLS
0401: YIQLLMIKYN KDFLSGNLEE SKNSMGFDFE FMSIMQQKSA SLSQASASAF KKVFRDIQNL VYNYASNDNS LLAMLKAGSK GNLLKLVQHN MCLGLQQSLV
0501: PVSFRMPRQL SCDAWNNHKS HLVIEKPHKV PECPGSYIPS AVVKSSFLAG LNPLECFVHS LTTRDSSFSG HADVSGTLNR KLMFFMRDLY VGYDGTVRNA
0601: YGNQIVQFSY YEAEQIASTK VTGEALESHN HAIGGHPVGS LAACAISEAA YCALDQPVSA LESSPLLNLK KILESGAGSR TGEKTASMFL SKRLGRWAHG
0701: FEYGALEVKG HLERLLLSEV VSTVMICFSP ETRKSTHNCP WVCHFHIDKE NVKTRRLKLR SVLDALNMRY RAATTKAGND LPNLHITCKD CSVAEVQKEK
0801: SEICITVSVV ETSKDPSSLL DTLRDVVIPF LLETVIKGFS AFKKVDILWK ELPSPSKSSR GPTGELYLQV FMSESCDRIK FWNALVDSCL QIRDLIDWER
0901: SYPDDVHDLT VAYGIDVAWE YFLCKLHSAV SETGKKILPE HLVLAADSLT TTGEFVPLSA KGLTLQRKAA GVVSPFMQAC FTNPGDSFVR AAKMGLSDDL
1001: QGSLESLAWG KTPSIGTGSS FDIMYSGKGY ELAEQINVYT LLRNLVTVDT PNVKVTLGKD GGMDGMSLVR RLDRLDDLDK KSCKSELSFT KLRSYFSFND
1101: IKKLSQSLKQ MLSKYDIGRE LNEADKCLAM MALQFHPRRN EKIGKGAPKE IKIGYHQEFE GSRCFMVVRS DDTVEDFSYR KCMQHALELI APQKAKTSRW
1201: LNGASA
0101: SLRNWERMTD LCDLMILQRG GILVRRNGVL VRISVMDGLQ KGDIIHRPLV DGDVVMINRP PSIHQHSLIA LSVRILPINS VLSINPLVCS PFRGDFDGDC
0201: LHGYIPQSID STIELSELVA LKQQLLDGQN GQNLLSLSHD SLTAAHLILE PGVFLDRFQM QQLQMFCPRQ LGMTAIVKAP PGNICYWTGK QLFSLLLPSD
0301: LEYVFPSNGV CISEGEIVTS SGGSSWLRDA SDNLFYSLVK HNGGDTLDLL YAAQTVLCEW LSMRGLSVSL SDLYISADSY SRENMIDEVC SGLQEAERLS
0401: YIQLLMIKYN KDFLSGNLEE SKNSMGFDFE FMSIMQQKSA SLSQASASAF KKVFRDIQNL VYNYASNDNS LLAMLKAGSK GNLLKLVQHN MCLGLQQSLV
0501: PVSFRMPRQL SCDAWNNHKS HLVIEKPHKV PECPGSYIPS AVVKSSFLAG LNPLECFVHS LTTRDSSFSG HADVSGTLNR KLMFFMRDLY VGYDGTVRNA
0601: YGNQIVQFSY YEAEQIASTK VTGEALESHN HAIGGHPVGS LAACAISEAA YCALDQPVSA LESSPLLNLK KILESGAGSR TGEKTASMFL SKRLGRWAHG
0701: FEYGALEVKG HLERLLLSEV VSTVMICFSP ETRKSTHNCP WVCHFHIDKE NVKTRRLKLR SVLDALNMRY RAATTKAGND LPNLHITCKD CSVAEVQKEK
0801: SEICITVSVV ETSKDPSSLL DTLRDVVIPF LLETVIKGFS AFKKVDILWK ELPSPSKSSR GPTGELYLQV FMSESCDRIK FWNALVDSCL QIRDLIDWER
0901: SYPDDVHDLT VAYGIDVAWE YFLCKLHSAV SETGKKILPE HLVLAADSLT TTGEFVPLSA KGLTLQRKAA GVVSPFMQAC FTNPGDSFVR AAKMGLSDDL
1001: QGSLESLAWG KTPSIGTGSS FDIMYSGKGY ELAEQINVYT LLRNLVTVDT PNVKVTLGKD GGMDGMSLVR RLDRLDDLDK KSCKSELSFT KLRSYFSFND
1101: IKKLSQSLKQ MLSKYDIGRE LNEADKCLAM MALQFHPRRN EKIGKGAPKE IKIGYHQEFE GSRCFMVVRS DDTVEDFSYR KCMQHALELI APQKAKTSRW
1201: LNGASA
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.