Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49206 | Canola | nucleus | 99.17 | 98.01 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 30.28 | 91.42 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 78.66 | 78.11 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 50.73 | 51.08 |
| KRH27976 | Soybean | nucleus | 48.44 | 48.07 |
| KRH77477 | Soybean | nucleus | 47.96 | 47.49 |
| Solyc08g080210.2.1 | Tomato | nucleus | 39.09 | 46.77 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.02 | 39.19 |
| Zm00001d031457_P009 | Maize | nucleus | 28.41 | 37.68 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 36.59 | 37.05 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 36.52 | 36.98 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 37.63 | 36.59 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 36.04 | 36.44 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 36.45 | 35.11 |
| Os09t0555200-01 | Rice | cytosol | 7.28 | 33.02 |
| Os04t0572600-01 | Rice | cytosol | 10.05 | 32.15 |
| Zm00001d031459_P001 | Maize | cytosol | 7.14 | 31.02 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 35.41 | 30.53 |
| Bra020267.1-P | Field mustard | nucleus | 18.02 | 18.98 |
| Bra000162.1-P | Field mustard | nucleus | 22.52 | 15.78 |
| Bra010510.1-P | Field mustard | nucleus | 19.27 | 15.24 |
| Bra003294.1-P | Field mustard | nucleus | 16.15 | 14.75 |
| Bra007345.1-P | Field mustard | nucleus | 15.87 | 13.96 |
| Bra011638.1-P | Field mustard | nucleus | 19.13 | 10.19 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | EnsemblPlantsGene:Bra027611 | EnsemblPlants:Bra027611.1 | EnsemblPlants:Bra027611.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | UniProt:M4EFP9 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | UniParc:UPI0002542495 | SEG:seg | : | : | : |
Description
AT1G63020 (E=0.0) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase
Coordinates
chrA09:+:7395354..7401297
Molecular Weight (calculated)
161594.0 Da
IEP (calculated)
7.976
GRAVY (calculated)
-0.327
Length
1443 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEKCEELEV PMGTLKSISF SISNNKDRKN MSVMEVEAAN QVTDSRLGLP NRDDICKSCG SKDRKVCEGH FGVINLRYPV INPHLLKEVA TLLNKFCPGC
0101: KYTKKKQSQS QSNTDYPLMK FRVTTKEAFR RSGIVCEVSE DNVLKLSKRG LSALPPDYWD FMPKDPNIDE SCLKPSRRIL THAQVYALLS GIDERVIRKE
0201: IPMFDSLPLA SFPVTPNGHR VSEMVTQFTG PRLVFDERTR IYKKLVGFEG NGLELSSRVM ECMQYSRLFS ENVSPSQESA NPYQKKSDTP ELRGLRFMKD
0301: VLLGKRSDHT FRTVVVGDPS LKLNEIGIPR SIAERLQVSE NLNDWNRDRL VTSCFHKLLE KGETHVRRGG RLVGIRAIDD LQTGDSFLRT LKDGDTVLMN
0401: RPPSIHQHSL IAMSVKVLPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKAELEEL VALDKQLVNR QNGRNLLSLG QDSLTAAYLV NVETNCFLNR
0501: AEMQQLQMYC PFELPRPAII RGSSTSSEPQ WTGKQLFGML FPPGFEYAYP LNNVVVTNGE LLSSSDGSGW LRDGEGNFIQ GLMKHDKEKV LDIIFSAQEM
0601: LSQWLLNRGL SVSLSDLYFA SDKHSRRNLT EEISYGLQEA EQVCNKQQLM VESRRDFLAV NGEEDTVVAD DLELFCYERQ RSATLSKLAV SAFKDAYRDV
0701: QALAYRYGDQ SNAFLVMSKA GSKGNMGKLA QHSMCIGLQN SSVALSFGFP RKLTCASWND PNSPLRGARG EDRTAHESFV PFGVVESSFL TGLNPLESFV
0801: HSVTSRDSSF SGNADLPGTL SRKLMFFMRD IYAAYDGTVR NSFGNHLVQF RYESSDDAEE DMTGEAVGSL SACAITEAAY SALDQPISLL ETSPLLNLKN
0901: VLECGSKKGL KEQTMSLYLS ETLSKKKHGF EYGALDIKRH LEKLCFSEIV STFSPRTNTR MPMSSWVCHF HISKKVLKQN QLDLESVVSS LNKQYANRKK
1001: ELKLDVIDLD IQSKNHCSWD DKAMEDDRVC ITVTVLEASR HDSLELDAIR LVLIPFLLDS PVKGYREIKK VDILWVDRPK APQRNKKGLA GELFLKVTMH
1101: GVRGKRSFWS ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVSDT GKAMLREHLL LVADSLSVTG EFVALNPKGW SRQRQAESTP
1201: APFAQACFSS PSQCFLKAAK EGVTDELEGS IDALAWGKVP SFGTGDQFEI IISPKNHGFS TPVVDVYGFL SRTATLPKRK AVRATSSSLP KSDEFTVQPF
1301: PVLDTALSKA VKTLDGKGLT RSQLRMIFTW NDMEKLSRSL KRILYNYEID ATLNELDGRL LMMALLFHPN RDEKIGPGFK GIKVANSKHG NARCFEVVRT
1401: DGTTEDFSYH KCVLGATEII APKRVNFYKA KYLRNGTVQP GAI
0101: KYTKKKQSQS QSNTDYPLMK FRVTTKEAFR RSGIVCEVSE DNVLKLSKRG LSALPPDYWD FMPKDPNIDE SCLKPSRRIL THAQVYALLS GIDERVIRKE
0201: IPMFDSLPLA SFPVTPNGHR VSEMVTQFTG PRLVFDERTR IYKKLVGFEG NGLELSSRVM ECMQYSRLFS ENVSPSQESA NPYQKKSDTP ELRGLRFMKD
0301: VLLGKRSDHT FRTVVVGDPS LKLNEIGIPR SIAERLQVSE NLNDWNRDRL VTSCFHKLLE KGETHVRRGG RLVGIRAIDD LQTGDSFLRT LKDGDTVLMN
0401: RPPSIHQHSL IAMSVKVLPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKAELEEL VALDKQLVNR QNGRNLLSLG QDSLTAAYLV NVETNCFLNR
0501: AEMQQLQMYC PFELPRPAII RGSSTSSEPQ WTGKQLFGML FPPGFEYAYP LNNVVVTNGE LLSSSDGSGW LRDGEGNFIQ GLMKHDKEKV LDIIFSAQEM
0601: LSQWLLNRGL SVSLSDLYFA SDKHSRRNLT EEISYGLQEA EQVCNKQQLM VESRRDFLAV NGEEDTVVAD DLELFCYERQ RSATLSKLAV SAFKDAYRDV
0701: QALAYRYGDQ SNAFLVMSKA GSKGNMGKLA QHSMCIGLQN SSVALSFGFP RKLTCASWND PNSPLRGARG EDRTAHESFV PFGVVESSFL TGLNPLESFV
0801: HSVTSRDSSF SGNADLPGTL SRKLMFFMRD IYAAYDGTVR NSFGNHLVQF RYESSDDAEE DMTGEAVGSL SACAITEAAY SALDQPISLL ETSPLLNLKN
0901: VLECGSKKGL KEQTMSLYLS ETLSKKKHGF EYGALDIKRH LEKLCFSEIV STFSPRTNTR MPMSSWVCHF HISKKVLKQN QLDLESVVSS LNKQYANRKK
1001: ELKLDVIDLD IQSKNHCSWD DKAMEDDRVC ITVTVLEASR HDSLELDAIR LVLIPFLLDS PVKGYREIKK VDILWVDRPK APQRNKKGLA GELFLKVTMH
1101: GVRGKRSFWS ALLETCLPIM DMIDWTRSHP DNIRQCCSVY GIDAGRSIFL ADLESAVSDT GKAMLREHLL LVADSLSVTG EFVALNPKGW SRQRQAESTP
1201: APFAQACFSS PSQCFLKAAK EGVTDELEGS IDALAWGKVP SFGTGDQFEI IISPKNHGFS TPVVDVYGFL SRTATLPKRK AVRATSSSLP KSDEFTVQPF
1301: PVLDTALSKA VKTLDGKGLT RSQLRMIFTW NDMEKLSRSL KRILYNYEID ATLNELDGRL LMMALLFHPN RDEKIGPGFK GIKVANSKHG NARCFEVVRT
1401: DGTTEDFSYH KCVLGATEII APKRVNFYKA KYLRNGTVQP GAI
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.