Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0555200-01 | Rice | cytosol | 56.63 | 59.12 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 24.4 | 54.73 |
| Os04t0572600-01 | Rice | cytosol | 63.55 | 46.78 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 31.33 | 21.76 |
| CDY68589 | Canola | cytosol | 31.33 | 19.51 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 81.63 | 18.26 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 59.64 | 13.89 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 59.34 | 13.82 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 59.04 | 13.74 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 59.34 | 13.15 |
| Solyc08g080210.2.1 | Tomato | nucleus | 34.34 | 9.45 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 44.88 | 8.9 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 35.24 | 8.16 |
| CDX93859 | Canola | nucleus | 31.93 | 7.33 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 31.93 | 7.3 |
| CDY32191 | Canola | nucleus | 31.63 | 7.27 |
| Bra027611.1-P | Field mustard | nucleus | 31.02 | 7.14 |
| CDY49206 | Canola | nucleus | 31.33 | 7.12 |
| KRH27976 | Soybean | nucleus | 31.02 | 7.08 |
| KRH77477 | Soybean | nucleus | 29.52 | 6.73 |
| Zm00001d053872_P021 | Maize | nucleus | 18.98 | 3.23 |
| Zm00001d003203_P003 | Maize | cytosol | 9.34 | 2.22 |
| Zm00001d029055_P010 | Maize | nucleus | 9.34 | 1.83 |
| Zm00001d024583_P003 | Maize | nucleus | 9.34 | 1.68 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 1.2 | 0.67 |
| Zm00001d031457_P009 | Maize | nucleus | 0.3 | 0.09 |
| CDY50743 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.10.450.40 | MapMan:35.1 | UniProt:A0A1D6KIZ1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | ProteinID:ONM02916.1 |
| PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | SUPFAM:SSF64484 | UniParc:UPI000845649E | EnsemblPlantsGene:Zm00001d031459 |
| EnsemblPlants:Zm00001d031459_P001 | EnsemblPlants:Zm00001d031459_T001 | : | : | : | : |
Description
required to maintain repression6 required to maintain repression6
Coordinates
chr1:+:190964811..190978369
Molecular Weight (calculated)
37393.0 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.458
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEHCKGGRF WPTLQNACIP VMELIDWELS QPSNVSDIFC SYGIDSAWKY FVESLKSATT DTGRNIRREH LLVIADSLSV TGQFHALSSQ GLKQQRTRLS
101: ISSPFSEACF SRPAQSFINA AKQCSVDNLC GSLDAVAWGK EPFNGTSGPF EIMHSGKPHE PEQNESIYDF LCSSKVRNFE KNHLDTRRQS TENASICRLA
201: CKSSKGSTTV NGVAITIDQD FLHAKVSIWD NIIDMRTSLQ NMLREYPLNG YVAEPDKSQL IEALKFHSRG AEKIGVGVRE IKIGLNPSHP GNYVSHFKDE
301: VKTERVWRSE LRRSSGLEVY VNSTQWDYVR WA
101: ISSPFSEACF SRPAQSFINA AKQCSVDNLC GSLDAVAWGK EPFNGTSGPF EIMHSGKPHE PEQNESIYDF LCSSKVRNFE KNHLDTRRQS TENASICRLA
201: CKSSKGSTTV NGVAITIDQD FLHAKVSIWD NIIDMRTSLQ NMLREYPLNG YVAEPDKSQL IEALKFHSRG AEKIGVGVRE IKIGLNPSHP GNYVSHFKDE
301: VKTERVWRSE LRRSSGLEVY VNSTQWDYVR WA
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.