Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11045 | Sorghum | nucleus | 96.77 | 96.98 |
| Os04t0492300-01 | Rice | nucleus | 85.65 | 86.33 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 12.98 | 83.41 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 81.42 | 81.36 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 81.28 | 81.22 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 81.13 | 81.08 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 13.2 | 80.7 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 81.42 | 79.65 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 40.39 | 78.52 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 40.46 | 78.44 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 78.26 | 78.04 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 38.02 | 76.48 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 41.54 | 75.88 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 7.6 | 71.62 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 7.82 | 67.7 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 7.1 | 66.89 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 75.25 | 66.18 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 15.57 | 65.56 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 49.71 | 64.59 |
| Solyc11g072730.1.1 | Tomato | nucleus | 63.7 | 63.88 |
| KRG88695 | Soybean | nucleus | 62.12 | 62.26 |
| Bra020267.1-P | Field mustard | nucleus | 59.97 | 61.02 |
| CDY09230 | Canola | nucleus | 59.97 | 61.02 |
| AT5G60040.2 | Thale cress | cytosol | 60.83 | 60.96 |
| Zm00001d024583_P003 | Maize | nucleus | 33.5 | 25.24 |
| Zm00001d029055_P010 | Maize | nucleus | 28.05 | 23.14 |
| Zm00001d031457_P009 | Maize | nucleus | 15.85 | 20.31 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 7.82 | 18.26 |
| Zm00001d053872_P021 | Maize | nucleus | 17.58 | 12.57 |
| Zm00001d031459_P001 | Maize | cytosol | 2.22 | 9.34 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| EntrezGene:103646285 | MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A1D6E7H3 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | ProteinID:ONM16380.1 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 | InterPro:RNAP_III_RPC1_N |
| InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004DE8811 | EnsemblPlantsGene:Zm00001d003203 |
| EnsemblPlants:Zm00001d003203_P003 | EnsemblPlants:Zm00001d003203_T003 | SEG:seg | : | : | : |
Description
DNA-directed RNA polymerase III subunit 1
Coordinates
chr2:-:35515788..35545102
Molecular Weight (calculated)
155102.0 Da
IEP (calculated)
9.327
GRAVY (calculated)
-0.258
Length
1394 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKPEEKLRC TKEPFIEDVG TRRIKSIRFS VLSGSEIRKS AEVQVWNNRI YDRDMTPVPN GLLDPRMGIP TKRGKCNTCH GEFSDCPGHF GYLKLALPVF
0101: NVGFFNCILD VLKCICKSCS RVLLIEKDRR EFLKKMRNPR ADALQKSATM KKVRDKCKLS CCPRCDYRNG VVKKGRAGLI VVHDCSKVLD GHTEELKNAL
0201: QNKKEKVSAS SVLVLDPATV LSLFRRMIDE DCELLNLGDR PEKLIVTEIA VPPVPIRPSV VVGNSRTSNE DSITVILKSI VNTNSILKET LHTGGPFTKC
0301: FDCWQYLQLQ VVEYVNSDAP SLPESQHRGL VQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLKITEVA IPVLMARVLT YPERVSNYNI EKLRQCIRNG
0401: PFKYPGANFV TQPDGMKQSL KYGDRRITAR DLKCGCIVER HLEDGDVVLF NRQPSLHRMS IMCHRARIMP WRTLRFNESV CNPYNADFDG DEMNLHVPQT
0501: EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS SFTLLCSYLG DGMENIDLPT PALIKPVELW TGKQLFSVLV RPNAHTKVFL
0601: NLAVQEKIYS KKKGKKEGGE EVKETMCGRE TMCPNDGYVY FRNSELLSGQ VGKATLGNGN KDGLYSVLLR DYNSHAAASC MNRLAKFSAR FIGNHGFSIG
0701: VDDVQPGEHL NRQKKKEIDG GYKKCHDLIS LFAKGALALH PGCNAAQTLE HNITGVLNEI RSIAGNVCMD TLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQSVGGRRA PDGFLNRTLP HFPINSKTPA AKGFVANSFY TGLTATEFFF HTMGGREGLV DTAVKTAETG YMSRRLMKGL EDLSVFYDQT VRNASGGIVQ
0901: FLYGDDGMDP AKMEGKDGMP LNLDQLFMKV MATCPQRGSD TLSPVGIKQM LEDKFLQHDT SSDGGCSAEF KKNLTEFLDK RIELMKCTRR ALHLHEDHVE
1001: KKDSCLEESI AAIISGISAK QLQVFLDTCL SRYQSKKIEA GASIGAIGAQ SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR IKEIINAAKK ISTPIITAQL
1101: LSRKDVLSAR IVKGSMEKAV LGEVAATIQT VLKSSLPNLV VKLDMQLIET LHMGISADSV KLSILNHPKL KLKSEHVRVI DRAKLRIYPA GTDKLKLQLE
1201: LHNLKSILPK VIVKGIPTVE RVVIDEVKVN NATERYQLLV EGTNLLAVMG TPGVDARKTK SNHIMETNQT LGIEAARRSI IDEIQYTMKS HGMNIDRRHM
1301: MLLADLMTYK GEILGITRYG IAKMKSSVLM LASFEKTAEH LFNASYSGRQ DQIEGVSECI IMGIPMQLGT GILKVRQRLD HVPEFKYQPD PILS
0101: NVGFFNCILD VLKCICKSCS RVLLIEKDRR EFLKKMRNPR ADALQKSATM KKVRDKCKLS CCPRCDYRNG VVKKGRAGLI VVHDCSKVLD GHTEELKNAL
0201: QNKKEKVSAS SVLVLDPATV LSLFRRMIDE DCELLNLGDR PEKLIVTEIA VPPVPIRPSV VVGNSRTSNE DSITVILKSI VNTNSILKET LHTGGPFTKC
0301: FDCWQYLQLQ VVEYVNSDAP SLPESQHRGL VQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLKITEVA IPVLMARVLT YPERVSNYNI EKLRQCIRNG
0401: PFKYPGANFV TQPDGMKQSL KYGDRRITAR DLKCGCIVER HLEDGDVVLF NRQPSLHRMS IMCHRARIMP WRTLRFNESV CNPYNADFDG DEMNLHVPQT
0501: EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS SFTLLCSYLG DGMENIDLPT PALIKPVELW TGKQLFSVLV RPNAHTKVFL
0601: NLAVQEKIYS KKKGKKEGGE EVKETMCGRE TMCPNDGYVY FRNSELLSGQ VGKATLGNGN KDGLYSVLLR DYNSHAAASC MNRLAKFSAR FIGNHGFSIG
0701: VDDVQPGEHL NRQKKKEIDG GYKKCHDLIS LFAKGALALH PGCNAAQTLE HNITGVLNEI RSIAGNVCMD TLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQSVGGRRA PDGFLNRTLP HFPINSKTPA AKGFVANSFY TGLTATEFFF HTMGGREGLV DTAVKTAETG YMSRRLMKGL EDLSVFYDQT VRNASGGIVQ
0901: FLYGDDGMDP AKMEGKDGMP LNLDQLFMKV MATCPQRGSD TLSPVGIKQM LEDKFLQHDT SSDGGCSAEF KKNLTEFLDK RIELMKCTRR ALHLHEDHVE
1001: KKDSCLEESI AAIISGISAK QLQVFLDTCL SRYQSKKIEA GASIGAIGAQ SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR IKEIINAAKK ISTPIITAQL
1101: LSRKDVLSAR IVKGSMEKAV LGEVAATIQT VLKSSLPNLV VKLDMQLIET LHMGISADSV KLSILNHPKL KLKSEHVRVI DRAKLRIYPA GTDKLKLQLE
1201: LHNLKSILPK VIVKGIPTVE RVVIDEVKVN NATERYQLLV EGTNLLAVMG TPGVDARKTK SNHIMETNQT LGIEAARRSI IDEIQYTMKS HGMNIDRRHM
1301: MLLADLMTYK GEILGITRYG IAKMKSSVLM LASFEKTAEH LFNASYSGRQ DQIEGVSECI IMGIPMQLGT GILKVRQRLD HVPEFKYQPD PILS
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.