Factsheet for AT5G60040.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020267.1-P	Field mustard	nucleus	85.05	86.35
CDY09230	Canola	nucleus	85.05	86.35
HORVU5Hr1G082550.1	Barley	cytosol, nucleus	11.0	70.51
HORVU7Hr1G011970.1	Barley	mitochondrion, nucleus	11.14	67.98
VIT_06s0004g03740.t01	Wine grape	nucleus	50.11	64.96
Solyc11g072730.1.1	Tomato	nucleus	63.26	63.31
KRG88695	Soybean	nucleus	62.26	62.26
EES11045	Sorghum	nucleus	61.11	61.11
Zm00001d003203_P003	Maize	cytosol	60.96	60.83
Os04t0492300-01	Rice	nucleus	60.32	60.67
TraesCS3B01G494500.1	Wheat	nucleus	58.73	58.57
TraesCS3D01G448000.1	Wheat	nucleus	58.66	58.49
TraesCS3A01G455500.1	Wheat	nucleus	58.66	58.49
TraesCS1A01G114500.1	Wheat	nucleus	29.12	58.44
TraesCS1B01G134500.1	Wheat	cytosol	58.16	57.87
HORVU6Hr1G027050.1	Barley	nucleus	58.66	57.26
TraesCS1A01G114600.1	Wheat	mitochondrion	29.33	56.9
TraesCS1D01G115900.3	Wheat	mitochondrion	29.4	56.88
HORVU1Hr1G025160.5	Barley	cytosol	30.98	56.49
HORVU3Hr1G013150.1	Barley	nucleus	5.82	54.73
GSMUA_Achr5P29280_001	Banana	nucleus	61.18	53.69
HORVU1Hr1G040070.1	Barley	mitochondrion	5.54	52.03
HORVU6Hr1G082430.1	Barley	cytosol	5.97	51.55
AT4G35800.1	Thale cress	nucleus	32.49	24.58
AT3G57660.1	Thale cress	nucleus	27.89	23.23
AT1G63020.2	Thale cress	cytosol, nucleus, plasma membrane	18.04	17.27
AT2G40030.1	Thale cress	nucleus	16.75	11.79

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.150.390	Gene3D:1.10.274.100	Gene3D:1.20.120.1280
MapMan:15.1.3.1	Gene3D:2.20.25.410	Gene3D:2.40.40.20	Gene3D:3.30.1490.180	EntrezGene:836126	ProteinID:AED97270.1
ArrayExpress:AT5G60040	EnsemblPlantsGene:AT5G60040	RefSeq:AT5G60040	TAIR:AT5G60040	RefSeq:AT5G60040-TAIR-G	EnsemblPlants:AT5G60040.2
TAIR:AT5G60040.2	Unigene:At.29190	UniProt:F4JXF8	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0006139	GO:GO:0006351
GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	InterPro:IPR038120	RefSeq:NP_001190573.1	Symbol:NRPC1	PFAM:PF00623	PFAM:PF04983
PFAM:PF04997	PFAM:PF04998	PFAM:PF05000	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR19376	PANTHER:PTHR19376:SF32	InterPro:RNAP_III_RPC1_N	InterPro:RNAP_III_Rpc1_C
InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_Rpb1_4	InterPro:RNA_pol_Rpb1_5	InterPro:RNA_pol_asu
InterPro:Rpb1_funnel_sf	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0001E93094	:	:

Description

NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]

Coordinates

chr5:+:24173259..24183298

Molecular Weight (calculated)

154627.0 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.188

Length

1391 amino acids

Sequence
(BLAST)

0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKVTEL ADYVSLRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH
0201: DRSKIHGGEI DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL
0301: GNASLHKILS QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI
0401: LTFPECVSRH NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE
0501: SVCNPYNADF DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE
0601: LWTGKQIFSV LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLALDI FPLGNGNKDG LYSILLRDYN SHAAAVCMNR
0701: LAKLSARWIG IHGFSIGIDD VQPGEELSKE RKDSIQFGYD QCHRKIEEFN RGNLQLKAGL DGAKSLEAEI TGILNTIREA TGKACMSGLH WRNSPLIMSQ
0801: CGSKGSPINI SQMVACVGQQ TVNGHRAPDG FIDRSLPHFP RMSKSPAAKG FVANSFYSGL TATEFFFHTM GGREGLVDTA VKTASTGYMS RRLMKALEDL
0901: LVHYDNTVRN ASGCILQFTY GDDGMDPALM EGKDGAPLNF NRLFLKVQAT CPPRSHHTYL SSEELSQKFE EELVRHDKSR VCTDAFVKSL REFVSLLGVK
1001: SASPPQVLYK ASGVTDKQLE VFVKICVFRY REKKIEAGTA IGTIGAQSIG EPGTQMTLKT FHFAGVASMN ITQGVPRINE IINASKNIST PVISAELENP
1101: LELTSARWVK GRIEKTTLGQ VAESIEVLMT STSASVRIIL DNKIIEEACL SITPWSVKNS ILKTPRIKLN DNDIRVLDTG LDITPVVDKS RAHFNLHNLK
1201: NVLPNIIVNG IKTVERVVVA EDMDKMLAKL IIPCPRWACT NLLAVMGTPG INGRTTTSNN VVEVSKTLGI EAARTTIIDE IGTVMGNHGM SIDIRHMMLL
1301: ADVMTYRGEV LGIQRTGIQK MDKSVLMQAS FERTGDHLFS AAASGKVDNI EGVTECVIMG IPMKLGTGIL KVLQRTDDLP KLKYGPDPII S

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.