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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003203_P003 Maize cytosol 96.98 96.77
Os04t0492300-01 Rice nucleus 86.27 86.77
HORVU5Hr1G082550.1 Barley cytosol, nucleus 13.16 84.33
TraesCS3A01G455500.1 Wheat nucleus 82.03 81.79
TraesCS3B01G494500.1 Wheat nucleus 82.03 81.79
TraesCS3D01G448000.1 Wheat nucleus 81.88 81.65
HORVU7Hr1G011970.1 Barley mitochondrion, nucleus 13.37 81.58
HORVU6Hr1G027050.1 Barley nucleus 82.17 80.21
TraesCS1A01G114600.1 Wheat mitochondrion 40.98 79.5
TraesCS1D01G115900.3 Wheat mitochondrion 41.05 79.42
TraesCS1B01G134500.1 Wheat cytosol 78.79 78.4
TraesCS1A01G114500.1 Wheat nucleus 38.17 76.62
HORVU1Hr1G025160.5 Barley cytosol 41.98 76.54
HORVU3Hr1G013150.1 Barley nucleus 7.69 72.3
HORVU6Hr1G082430.1 Barley cytosol 7.91 68.32
HORVU1Hr1G040070.1 Barley mitochondrion 7.19 67.57
GSMUA_Achr5P29280_001 Banana nucleus 75.56 66.31
VIT_06s0004g03730.t01 Wine grape mitochondrion, nucleus, plastid 15.46 64.95
VIT_06s0004g03740.t01 Wine grape nucleus 49.82 64.59
Solyc11g072730.1.1 Tomato nucleus 63.98 64.03
KRG88695 Soybean nucleus 61.9 61.9
Bra020267.1-P Field mustard nucleus 60.24 61.17
CDY09230 Canola nucleus 60.24 61.17
AT5G60040.2 Thale cress cytosol 61.11 61.11
EES13372 Sorghum nucleus 33.86 25.36
EES08565 Sorghum nucleus 33.29 24.65
KXG22455 Sorghum nucleus 27.82 22.34
OQU82183 Sorghum endoplasmic reticulum, plasma membrane 18.69 17.52
KXG34194 Sorghum nucleus 14.88 13.13
OQU84386 Sorghum nucleus 17.54 12.11
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.10.132.30Gene3D:1.10.150.390Gene3D:1.10.274.100Gene3D:1.20.120.1280
MapMan:15.1.3.1Gene3D:2.20.25.410Gene3D:2.40.40.20Gene3D:3.30.1490.180EntrezGene:8073709UniProt:C5YBD9
EnsemblPlants:EES11045ProteinID:EES11045ProteinID:EES11045.1GO:GO:0001056GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005666GO:GO:0006139GO:GO:0006351
GO:GO:0006383GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740
GO:GO:0016779InterPro:IPR038120PFAM:PF00623PFAM:PF04983PFAM:PF04997PFAM:PF04998
PFAM:PF05000PANTHER:PTHR19376PANTHER:PTHR19376:SF32InterPro:RNAP_III_RPC1_NInterPro:RNAP_III_Rpc1_CInterPro:RNA_pol_N
InterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3InterPro:RNA_pol_Rpb1_4InterPro:RNA_pol_Rpb1_5InterPro:RNA_pol_asuInterPro:Rpb1_funnel_sf
SMART:SM00663EnsemblPlantsGene:SORBI_3006G131200SUPFAM:SSF64484unigene:Sbi.11161UniParc:UPI0001A86CE4RefSeq:XP_002446717.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:+:49548805..49562183
Molecular Weight (calculated)
154989.0 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.279
Length
1391 amino acids
Sequence
(BLAST)
0001: MAKPEEKLRC TKEPFIEDVG TRRIKSIRFS VLSGSEIRKS AEVQVWNNRI YGHDMKPVPN GLLDPRMGVP NKREKCSTCH GEFSDCPGHF GYLKLALPVF
0101: NVGFFNCILD VLKCICKSCS RVLLFEKDRR EFLKKMRNPR ADALQKSATM KKVRDKCKLS CCPRCDYRNG VVKKGRAGLI VVHDCSKVLD GHTEELKNAL
0201: QNKKEKVSAN SVRVLDPATV LSLFRRMTDE DCELLNLGDR PEKLIVSEIA VPPVPIRPSV VVGSSRTSNE DSITVILKSI VNTNSILKET LHTGGPFTKC
0301: FDCWQYLQLQ VVEYVNSDAP CLPDSQHRGL VQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLKITEVA IPVLMARVLT YPERVSNYNI EKLRQCIRNG
0401: PFKYPGANFV TQPDGMKQSL KYGDRRITAR DLKCGCIVER HLEDGDVVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG DEMNLHVPQT
0501: EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS SFTLLCSYLG DAMENIDLPT PALIKPIELW TGKQLFSVLV RPNAHTRVFL
0601: NLAVQEKIYS KKKGKKEAGE ETMCGRETMC PNDGYVYFRN SELLSGQVGK ATLGNGNKDG LYSVLLRDYN SHAAASCMNR LAKFSARFIG NHGFSIGVDD
0701: VQPGEHLNRQ KKKEIDGGYK KCHDLISLFA KGALALHPGC NAAQTLEHNI TGVLNEIRSI AGNVCMDTLH WRNSPLIMSQ CGSKGSPINI SQMVACVGQQ
0801: SVGGRRAPDG FLNRTLPHFP INSKTPAAKG FVANSFYTGL TATEFFFHTM GGREGLVDTA VKTAETGYMS RRLMKGLEDL SVFYDQTVRN ASGGIVQFLY
0901: GDDGMDPAKM EGKDGMPLNL DQLFMKVMAT CPQRGSDTLS PEAIKQMLED KLLQHDTSSD GGCSEEFKKN LTEFLDKRIE LMKCTRRALH LHEDHVEKKD
1001: SCVEESVAAI ISGISAKQLQ VFLDTCLSRY QSKKIEAGAS IGAIGAQSIG EPGTQMTLKT FHFAGVASMN VTLGVPRIKE IINAARKIST PIITAQLLSK
1101: KDVLSARIVK GSMEKAVLGE VAVAIQIVLK SSQPNLIVKL DMQLIESLHM GISADSVQLS ILNHPKIKLK SEHVRVIDRA KLRIYPAGTD KRKLQLELHN
1201: LKSILPKVIV KGIPTVERVV IDEVKVKNET ERYQLLVEGT NLLAVMGTPG VDATKTKSNH IMETNQTLGI EAARRSIIDE IQYTMKSHGM NIDRRHMMLL
1301: ADLMTYKGEI LGITRYGIAK MKSSVLMLAS FEKTSEHLFN ASYSGREDQI EGVSECIIMG IPMQLGTGIL KVRQRLDHVP EFKYQPDPIL S
Best Arabidopsis Sequence Match ( AT5G60040.1 )
(BLAST)
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.