Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 13.59 | 86.64 |
| EES11045 | Sorghum | nucleus | 86.77 | 86.27 |
| Zm00001d003203_P003 | Maize | cytosol | 86.33 | 85.65 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 85.54 | 84.8 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 85.47 | 84.73 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 85.32 | 84.59 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 13.81 | 83.77 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 85.32 | 82.81 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 42.59 | 82.15 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 42.52 | 81.78 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 82.43 | 81.55 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 40.13 | 80.09 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 43.82 | 79.42 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 7.95 | 74.32 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 8.17 | 70.19 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 7.45 | 69.59 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 76.72 | 66.94 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 15.84 | 66.16 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 50.11 | 64.59 |
| Solyc11g072730.1.1 | Tomato | nucleus | 64.43 | 64.1 |
| KRG88695 | Soybean | nucleus | 62.69 | 62.33 |
| Bra020267.1-P | Field mustard | nucleus | 60.45 | 61.02 |
| CDY09230 | Canola | nucleus | 60.45 | 61.02 |
| AT5G60040.2 | Thale cress | cytosol | 60.67 | 60.32 |
| Os05t0151000-00 | Rice | nucleus | 34.06 | 25.57 |
| Os02t0152600-01 | Rice | plasma membrane | 4.7 | 23.13 |
| Os02t0152800-01 | Rice | cytosol | 7.59 | 21.52 |
| Os06t0612200-01 | Rice | nucleus | 3.47 | 20.25 |
| Os01t0965000-00 | Rice | nucleus | 14.75 | 13.17 |
| Os09t0555200-01 | Rice | cytosol | 2.17 | 9.43 |
| Os04t0572600-01 | Rice | cytosol | 2.89 | 8.87 |
| Os02t0152700-01 | Rice | nucleus | 0.07 | 0.24 |
Protein Annotations
Description
Similar to DNA-directed RNA polymerase II largest chain. (Os04t0492300-01)
Coordinates
chr4:+:24593234..24604107
Molecular Weight (calculated)
154137.0 Da
IEP (calculated)
9.019
GRAVY (calculated)
-0.244
Length
1383 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARPEEKLRC TKEPFIEDVG TRRIKSIRFS MFSGNEVRQS AEVQVWNSRI YNHEMKPVPN GLLDTRMGAA NKLGECSTCH GSFAECPGHF GYLKLALPVF
0101: NVGFFNCILD VLKCICKSCS RVLLMEKDRL EFLKKMRNPK ADPLQKSAIM KKVRDKCKLS RCPWCGFING VAKKGRAGLI ILHDCSKTLD GSTEELRDAL
0201: SHKKEKLSIS AVRMLDPAIV LSLFKRMTDE DCELLNLGDR PEKLIVTEIA VPPVPIRPSV FVAGGRMSNE DSITVILKSI ANTNSILKEN LQTGGQFMKC
0301: FDCWQHLQLQ VVEYINSDAP SLPESQHRGL VQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLRITEVA IPILMARVLT YPERVSYYNI EKLRQCIRNG
0401: PHKHPGANFI IQPDGTKLHL KYCDRRIAAR DLKYGCVVER HLEDGDIVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG DEMNLHVPQT
0501: EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDNFYDRS SFSLLCSYLG DAMENIDLPT PALIKPIELW TGKQLFSVLV RPNACTKVFL
0601: NLTVKEKIYK TPKGSTLEPE AMCPNDGFVY FRNSELLSGQ VGKATLGNGN KDGMFSTLVR DYNSHAAASC MNRLAKFSAR FIGNHGFSIG VDDVQPGEHL
0701: NQEKKMKIDG GYKDCHDLIA SYSKGALRLQ PGCNAAQTLE QSITRVLNEI REEAGKVCMN TLHWRNSPLI MSQCGSKGSP INISQMVACV GQQSVGGRRA
0801: PNGFIDRTLP HFPINSKTPA AKGFVANSFY TGLTATEFFF HTMGGREGLV DTAVKTAETG YMSRRLMKGL EDLSVFYDQT VRNASGGIVQ FLYGDDGMDP
0901: AKMEGKDGKP LNLDQLFMKV MATCPQRGQN TLSPGEILQI LNDKLSEHDA SSDDGCSEKF KQLLTYFLED RIKLLKSTRR ALLLDEDHVG ERHSSFEESI
1001: AANISGISVK QLQVFLDTCL SRYHLKKIEA GASIGAIGAQ SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR IKEIINAAKK ISTPIITAEL LSEKDVLSAR
1101: IVKGSMEKAV LGEVAEAIKI VLKSSQPNLV VKLDMQRIEA LHMGISADSV QLSILNHPKI KLKSEHVRVI DKSKLRIYPA GIDKSKLLYE LHHLKSMLPK
1201: VIVKGIPTVE RAVISETGEE NDKRYKLLVE GTNLLAVMGT PGVDAMKTKS NHIMEVNRTL GIEAARRSII DEIQYTMKSH GMNIDSRHMM LLADLMTYKG
1301: EILGITRYGI AKMKSSVLML ASFEKTAEHL FNASYSGRED QIEGVSECII MGIPMQLGTG ILKVRQRLDH LPEFKYQPDP ILA
0101: NVGFFNCILD VLKCICKSCS RVLLMEKDRL EFLKKMRNPK ADPLQKSAIM KKVRDKCKLS RCPWCGFING VAKKGRAGLI ILHDCSKTLD GSTEELRDAL
0201: SHKKEKLSIS AVRMLDPAIV LSLFKRMTDE DCELLNLGDR PEKLIVTEIA VPPVPIRPSV FVAGGRMSNE DSITVILKSI ANTNSILKEN LQTGGQFMKC
0301: FDCWQHLQLQ VVEYINSDAP SLPESQHRGL VQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLRITEVA IPILMARVLT YPERVSYYNI EKLRQCIRNG
0401: PHKHPGANFI IQPDGTKLHL KYCDRRIAAR DLKYGCVVER HLEDGDIVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG DEMNLHVPQT
0501: EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDNFYDRS SFSLLCSYLG DAMENIDLPT PALIKPIELW TGKQLFSVLV RPNACTKVFL
0601: NLTVKEKIYK TPKGSTLEPE AMCPNDGFVY FRNSELLSGQ VGKATLGNGN KDGMFSTLVR DYNSHAAASC MNRLAKFSAR FIGNHGFSIG VDDVQPGEHL
0701: NQEKKMKIDG GYKDCHDLIA SYSKGALRLQ PGCNAAQTLE QSITRVLNEI REEAGKVCMN TLHWRNSPLI MSQCGSKGSP INISQMVACV GQQSVGGRRA
0801: PNGFIDRTLP HFPINSKTPA AKGFVANSFY TGLTATEFFF HTMGGREGLV DTAVKTAETG YMSRRLMKGL EDLSVFYDQT VRNASGGIVQ FLYGDDGMDP
0901: AKMEGKDGKP LNLDQLFMKV MATCPQRGQN TLSPGEILQI LNDKLSEHDA SSDDGCSEKF KQLLTYFLED RIKLLKSTRR ALLLDEDHVG ERHSSFEESI
1001: AANISGISVK QLQVFLDTCL SRYHLKKIEA GASIGAIGAQ SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR IKEIINAAKK ISTPIITAEL LSEKDVLSAR
1101: IVKGSMEKAV LGEVAEAIKI VLKSSQPNLV VKLDMQRIEA LHMGISADSV QLSILNHPKI KLKSEHVRVI DKSKLRIYPA GIDKSKLLYE LHHLKSMLPK
1201: VIVKGIPTVE RAVISETGEE NDKRYKLLVE GTNLLAVMGT PGVDAMKTKS NHIMEVNRTL GIEAARRSII DEIQYTMKSH GMNIDSRHMM LLADLMTYKG
1301: EILGITRYGI AKMKSSVLML ASFEKTAEHL FNASYSGRED QIEGVSECII MGIPMQLGTG ILKVRQRLDH LPEFKYQPDP ILA
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.