Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0572600-01 | Rice | cytosol | 89.31 | 62.97 |
| Zm00001d031459_P001 | Maize | cytosol | 59.12 | 56.63 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 22.01 | 47.3 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 33.65 | 22.38 |
| CDY68589 | Canola | cytosol | 33.02 | 19.7 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 66.98 | 14.95 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 66.67 | 14.88 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 66.67 | 14.86 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 66.67 | 14.29 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 67.3 | 14.29 |
| Os06t0612200-01 | Rice | nucleus | 9.12 | 12.24 |
| Solyc08g080210.2.1 | Tomato | nucleus | 36.16 | 9.54 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 48.11 | 9.14 |
| Os02t0152700-01 | Rice | nucleus | 11.95 | 9.13 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 38.36 | 8.51 |
| KRH27976 | Soybean | nucleus | 34.91 | 7.63 |
| CDX93859 | Canola | nucleus | 34.28 | 7.53 |
| CDY32191 | Canola | nucleus | 33.96 | 7.48 |
| KRH77477 | Soybean | nucleus | 33.65 | 7.34 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 33.33 | 7.3 |
| Bra027611.1-P | Field mustard | nucleus | 33.02 | 7.28 |
| CDY49206 | Canola | nucleus | 33.02 | 7.19 |
| Os01t0965000-00 | Rice | nucleus | 21.38 | 4.39 |
| Os04t0492300-01 | Rice | nucleus | 9.43 | 2.17 |
| Os02t0152600-01 | Rice | plasma membrane | 1.57 | 1.78 |
| Os05t0151000-00 | Rice | nucleus | 10.06 | 1.74 |
| Os02t0152800-01 | Rice | cytosol | 0.0 | 0.0 |
| CDY50743 | Canola | nucleus | 0.0 | 0.0 |
| Zm00001d031457_P009 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os09t0555200-01 | EnsemblPlantsGene:Os09g0555200 | Gene3D:3.10.450.40 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | PFAM:PF11523 |
| ProteinID:BAF25803.1 | ProteinID:BAT09343.1 | SUPFAM:SSF64484 | UniParc:UPI0000DD987B | UniProt:Q0IZR2 | MapMan:35.1 |
Description
Similar to DNA-directed RNA polymerase. (Os09t0555200-01)
Coordinates
chr9:+:22029199..22032739
Molecular Weight (calculated)
35735.3 Da
IEP (calculated)
9.011
GRAVY (calculated)
-0.452
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: LIDWERSRPE RVYDIFCSYG IDSAWKYFVE SLRSTTDAIG RNIHRQHLLV VADCLSISGQ FHGLSSQGLK QQRAWLSISS PFSEACFSRP AYSFINAAKR
101: DSVDNLSGAL DAIAWGKEPC AGTSGPFKVL YSGKSQKTKQ NKNIYDFLHN PEVQALEKNF MDTYKQRTEK PSKQRSAFSS KGNATINGGT ISVNQKFLDS
201: KVGIWENIID MRTCLQNMLR EYTLNEVVTE QDKSCLIEAL KFHPRGYDKI GVGIREIKIG VNPGHPNSRC FIVQRSDDTS ADFSYNKCVL GAANSISPEL
301: GSYIEKILSN RAIRPHQL
101: DSVDNLSGAL DAIAWGKEPC AGTSGPFKVL YSGKSQKTKQ NKNIYDFLHN PEVQALEKNF MDTYKQRTEK PSKQRSAFSS KGNATINGGT ISVNQKFLDS
201: KVGIWENIID MRTCLQNMLR EYTLNEVVTE QDKSCLIEAL KFHPRGYDKI GVGIREIKIG VNPGHPNSRC FIVQRSDDTS ADFSYNKCVL GAANSISPEL
301: GSYIEKILSN RAIRPHQL
0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.