Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 22.08 | 57.29 |
| KXG34194 | Sorghum | nucleus | 57.2 | 56.18 |
| Os02t0152800-01 | Rice | cytosol | 16.53 | 52.46 |
| Os09t0555200-01 | Rice | cytosol | 4.39 | 21.38 |
| Os04t0572600-01 | Rice | cytosol | 5.55 | 19.07 |
| Os02t0152600-01 | Rice | plasma membrane | 2.84 | 15.66 |
| Os06t0612200-01 | Rice | nucleus | 2.32 | 15.19 |
| Os05t0151000-00 | Rice | nucleus | 17.62 | 14.82 |
| Os04t0492300-01 | Rice | nucleus | 13.17 | 14.75 |
| Os02t0152700-01 | Rice | nucleus | 3.1 | 11.54 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 |
| UniProt:A0A0P0VD80 | ProteinID:BAS76368.1 | ncoils:Coil | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | GO:GO:0046872 | EnsemblPlantsGene:Os01g0965000 | EnsemblPlants:Os01t0965000-00 | PFAM:PF00623 | PFAM:PF04997 |
| PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000393AB12 | SEG:seg | : | : |
Description
Similar to DNA-directed RNA polymerase. (Os01t0965000-00)
Coordinates
chr1:-:42549567..42556862
Molecular Weight (calculated)
171927.0 Da
IEP (calculated)
7.638
GRAVY (calculated)
-0.376
Length
1549 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGHPDPTSA ATAMIPEASI RRINLSITSN EEILKAQPVN ELEKPIPITH QSQLLNNPYL GLPLQVGSCQ SCGSNAIEEC EGHFRFIELP MPIFHPSHVT
0101: ELSQILNLIC LRCLKIKNRK ELPPLCVAEV KKSNGARGLE LRAPIKKELE EGFWSFLDQF GSCTRGTSHC RPLLPEEVQN IIKKIPEETR RWLSVRGYIP
0201: QDGFILSYLC VPPNCLRVSN VLDGNTFSCS GTSTNLLRKA LRKIQQIRGS RIGSSNIQVD QVADDLQVDV ANYINLGGTT KGHGDDTFTS QPTAMQWKQK
0301: MKTLFISKSS SFSSRGVITG DPYIGLNVVG VPEEVAKRMS VEEKVTDHNI AQLQDMMNKG LCLTYTDANS ITYSLDAGKD NPNKKHTILK VGEIVNRRVF
0401: DGDIVFLNRP PSTDKHSVEA FYVQVHNDHT IKINPLICDP LGADFDGDCV QIFYPRSLSA RAEAKELYTV DKQLVSSHNG KLNFQFKNDF SLALKIMCGR
0501: EYSEREANQI TNAMFSSGMY PQKPLIGGPY WTFPQILETT KSNAITLADH LDRESVGALA TGTTISSILS TKGPREATEF LNLLQPLLME SLLIDCFSIN
0601: LGDFTVPSPI LEAIQNNPLE LNKYREPIMD FITHSSAIGL LVDPKSDSNM NKVVEQLGFL GPQLQHNGRL YSSRLVEDCL SKSLHRCCGS TNCCNPLEEY
0701: GTVRSSIYHG LNPYEALLHS ICEREKIMRA SKGLVEPGSL FKNMMSRLRD VTACYDGSIR TSSGNLVLQF GSRDASNCVT PGDPVGILAA TAVANAAYKA
0801: VLAPNQNNII SWDSMKEVLL TRASTKADAN HRKVILYLNQ CSCENECMER ALTIRACLRR IKLEDCTTEI SIKYQQQATQ AAHHLVGHIH LDKKQLNQIE
0901: TIMDSVLHKC QETFRNNIKK KGSMREILKT VTFISSTSLC DQHTDDDKKF QVSCLQFFLP GSITKNISES TERVIDFMTN AIFPIILDTV IKGDPRVEEA
1001: NLVRIEPEST FWVQSSGAEQ KGEAALEITV EEAAAAESGN AWGVAMNACI PVMDLIDTTR SMPYDIQQVR QVFGISSAFE KVTQVQLFPF LLLAEIQVTS
1101: AETLLVLCSF QYLSKSVGMI TKSVLQEHLT TVASSMTCTG DLHGFNNSGY KATCQSLKVQ APFMEATLSR SIQCFEKAAA KAYSDQLGNV VSACSWGNNA
1201: EIGTGSAFEI LWNDENMSSS KSILGGYGLY DFLEAVETTG ATKDKAIVPH NYCLYDVDCI PEDKVCLEEN NQITWTDKPK AEFLMESEGR RAGMHSTGQK
1301: HPRKPNWHEG NTKSSPNSTA VEFTGQVFQR RQLKTKSNWN SDATQQDDKP SWYSSNSAGT QNFTIAGSSR PGEWNRKNNN RGQGGGREVW KSEGPHRGGS
1401: SSNRNQGGGR AVWKSEASHR GSGNNRNRGG GRAVWKSEAS RRGGSMRQVA SCAFTPVEQQ IFEQIEPITK NVKRIIRESR YFSGPINLKR HKDGIKLPPD
1501: DEKFIVTNVL MYHPERKKKI AGNGNYITYD QTCSVTVNSL LNIRKTLNA
0101: ELSQILNLIC LRCLKIKNRK ELPPLCVAEV KKSNGARGLE LRAPIKKELE EGFWSFLDQF GSCTRGTSHC RPLLPEEVQN IIKKIPEETR RWLSVRGYIP
0201: QDGFILSYLC VPPNCLRVSN VLDGNTFSCS GTSTNLLRKA LRKIQQIRGS RIGSSNIQVD QVADDLQVDV ANYINLGGTT KGHGDDTFTS QPTAMQWKQK
0301: MKTLFISKSS SFSSRGVITG DPYIGLNVVG VPEEVAKRMS VEEKVTDHNI AQLQDMMNKG LCLTYTDANS ITYSLDAGKD NPNKKHTILK VGEIVNRRVF
0401: DGDIVFLNRP PSTDKHSVEA FYVQVHNDHT IKINPLICDP LGADFDGDCV QIFYPRSLSA RAEAKELYTV DKQLVSSHNG KLNFQFKNDF SLALKIMCGR
0501: EYSEREANQI TNAMFSSGMY PQKPLIGGPY WTFPQILETT KSNAITLADH LDRESVGALA TGTTISSILS TKGPREATEF LNLLQPLLME SLLIDCFSIN
0601: LGDFTVPSPI LEAIQNNPLE LNKYREPIMD FITHSSAIGL LVDPKSDSNM NKVVEQLGFL GPQLQHNGRL YSSRLVEDCL SKSLHRCCGS TNCCNPLEEY
0701: GTVRSSIYHG LNPYEALLHS ICEREKIMRA SKGLVEPGSL FKNMMSRLRD VTACYDGSIR TSSGNLVLQF GSRDASNCVT PGDPVGILAA TAVANAAYKA
0801: VLAPNQNNII SWDSMKEVLL TRASTKADAN HRKVILYLNQ CSCENECMER ALTIRACLRR IKLEDCTTEI SIKYQQQATQ AAHHLVGHIH LDKKQLNQIE
0901: TIMDSVLHKC QETFRNNIKK KGSMREILKT VTFISSTSLC DQHTDDDKKF QVSCLQFFLP GSITKNISES TERVIDFMTN AIFPIILDTV IKGDPRVEEA
1001: NLVRIEPEST FWVQSSGAEQ KGEAALEITV EEAAAAESGN AWGVAMNACI PVMDLIDTTR SMPYDIQQVR QVFGISSAFE KVTQVQLFPF LLLAEIQVTS
1101: AETLLVLCSF QYLSKSVGMI TKSVLQEHLT TVASSMTCTG DLHGFNNSGY KATCQSLKVQ APFMEATLSR SIQCFEKAAA KAYSDQLGNV VSACSWGNNA
1201: EIGTGSAFEI LWNDENMSSS KSILGGYGLY DFLEAVETTG ATKDKAIVPH NYCLYDVDCI PEDKVCLEEN NQITWTDKPK AEFLMESEGR RAGMHSTGQK
1301: HPRKPNWHEG NTKSSPNSTA VEFTGQVFQR RQLKTKSNWN SDATQQDDKP SWYSSNSAGT QNFTIAGSSR PGEWNRKNNN RGQGGGREVW KSEGPHRGGS
1401: SSNRNQGGGR AVWKSEASHR GSGNNRNRGG GRAVWKSEAS RRGGSMRQVA SCAFTPVEQQ IFEQIEPITK NVKRIIRESR YFSGPINLKR HKDGIKLPPD
1501: DEKFIVTNVL MYHPERKKKI AGNGNYITYD QTCSVTVNSL LNIRKTLNA
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYA FLVLTLCLYN FQFYV
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYA FLVLTLCLYN FQFYV
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.