Factsheet for AT1G63020.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93859	Canola	nucleus	80.25	80.58
CDY32191	Canola	nucleus	80.04	80.54
CDY50743	Canola	nucleus	45.15	80.39
Bra027611.1-P	Field mustard	nucleus	78.11	78.66
CDY49206	Canola	nucleus	79.01	78.63
Bra041010.1-P	Field mustard	cytosol, plastid	24.85	75.52
CDY68589	Canola	cytosol	27.25	74.3
VIT_02s0025g04530.t01	Wine grape	nucleus	51.76	52.48
KRH27976	Soybean	nucleus	49.83	49.79
KRH77477	Soybean	nucleus	49.07	48.94
Solyc08g080210.2.1	Tomato	nucleus	39.02	47.01
HORVU0Hr1G000370.1	Barley	extracellular	3.99	39.19
Zm00001d031457_P009	Maize	nucleus	28.63	38.24
TraesCS1D01G108700.1	Wheat	nucleus	36.89	37.61
TraesCS1A01G106300.1	Wheat	nucleus	36.75	37.47
TraesCS1B01G123600.1	Wheat	nucleus	36.41	37.07
OQU82183	Sorghum	endoplasmic reticulum, plasma membrane	37.72	36.93
HORVU1Hr1G023350.20	Barley	cytosol, nucleus, plastid	36.68	35.58
Os09t0555200-01	Rice	cytosol	7.3	33.33
Os04t0572600-01	Rice	cytosol	10.05	32.37
Zm00001d031459_P001	Maize	cytosol	7.3	31.93
GSMUA_Achr8P12010_001	Banana	golgi	34.89	30.29
AT5G60040.2	Thale cress	cytosol	17.27	18.04
AT2G40030.1	Thale cress	nucleus	21.95	16.14
AT4G35800.1	Thale cress	nucleus	18.93	14.95
AT3G57660.1	Thale cress	nucleus	15.83	13.77

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.274.100	Gene3D:1.10.40.90	Gene3D:1.20.120.1280
MapMan:15.1.4.1	Gene3D:2.40.40.20	Gene3D:3.10.450.40	EntrezGene:842605	ProteinID:AAF75815.1	ProteinID:AAG51604.1
ProteinID:AEE34041.1	ProteinID:AEE34042.1	ArrayExpress:AT1G63020	EnsemblPlantsGene:AT1G63020	RefSeq:AT1G63020	TAIR:AT1G63020
RefSeq:AT1G63020-TAIR-G	EnsemblPlants:AT1G63020.2	TAIR:AT1G63020.2	EMBL:AY826515	Unigene:At.36192	ncoils:Coil
EMBL:DQ020657	GO:GO:0000418	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010495	GO:GO:0016740	GO:GO:0016779	GO:GO:0030422	GO:GO:0031047	GO:GO:0040029
GO:GO:0046872	InterPro:IPR038120	RefSeq:NP_001185298.1	RefSeq:NP_176490.2	Symbol:NRPD1A	PFAM:PF00623
PFAM:PF04983	PFAM:PF04997	PFAM:PF05000	PFAM:PF11523	PO:PO:0000037	PO:PO:0000293
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020100	PO:PO:0025022	PANTHER:PTHR19376	PANTHER:PTHR19376:SF40	UniProt:Q9LQ02	InterPro:RNA_pol_N
InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_Rpb1_4	InterPro:RNA_pol_asu	InterPro:Rpb1_funnel_sf	SMART:SM00663
SUPFAM:SSF64484	UniParc:UPI00000AB588	SEG:seg	:	:	:

Description

NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]

Coordinates

chr1:-:23354685..23362487

Molecular Weight (calculated)

162530.0 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.266

Length

1453 amino acids

Sequence
(BLAST)

0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.