Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G013150.1 | Barley | nucleus | 84.47 | 91.89 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 78.88 | 85.81 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 59.01 | 12.45 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 80.12 | 9.05 |
| Os04t0492300-01 | Rice | nucleus | 70.19 | 8.17 |
| EES11045 | Sorghum | nucleus | 68.32 | 7.91 |
| Zm00001d003203_P003 | Maize | cytosol | 67.7 | 7.82 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 45.96 | 6.9 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 62.11 | 6.31 |
| Bra020267.1-P | Field mustard | nucleus | 52.17 | 6.13 |
| CDY09230 | Canola | nucleus | 52.17 | 6.13 |
| AT5G60040.2 | Thale cress | cytosol | 51.55 | 5.97 |
| Solyc11g072730.1.1 | Tomato | nucleus | 50.31 | 5.83 |
| KRG88695 | Soybean | nucleus | 50.31 | 5.82 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 29.19 | 5.44 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 27.33 | 4.84 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 6.83 | 3.32 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 4.35 | 3.07 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 1.86 | 3.0 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 32.3 | 2.92 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 32.92 | 2.8 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 25.47 | 2.31 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 17.39 | 1.87 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 1.86 | 1.38 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 1.24 | 1.35 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 13.66 | 1.12 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 1.86 | 1.06 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 0.62 | 0.26 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 1.86 | 0.23 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:35.1 | UniProt:A0A287UY45 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| EnsemblPlantsGene:HORVU6Hr1G082430 | EnsemblPlants:HORVU6Hr1G082430.1 | PFAM:PF04997 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 | InterPro:RNA_pol_Rpb1_1 |
| SUPFAM:SSF64484 | UniParc:UPI000B482B88 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:548448233..548453792
Molecular Weight (calculated)
18038.1 Da
IEP (calculated)
11.299
GRAVY (calculated)
-0.420
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFNMLSGKE IRQSAEAQVW NNRIYGPDMK PVPNGLLDTR MGAANKQGDC GTCHGSYTEC PGHFGYLKLA LPVFNVGFFN NILDVVKCIC KGCSRVLLVE
101: KDRREFLKKA RRLGVASALR FCLRERAARR GSRRGRGVRR RERLNSGVTL GTRPARFGCA S
101: KDRREFLKKA RRLGVASALR FCLRERAARR GSRRGRGVRR RERLNSGVTL GTRPARFGCA S
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.