Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14890_001 | Banana | cytosol | 44.79 | 80.79 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 24.54 | 80.3 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 84.03 | 79.78 |
| CDY71816 | Canola | cytosol | 24.07 | 72.98 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 31.37 | 68.96 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 74.19 | 45.53 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 93.4 | 45.31 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 96.06 | 44.94 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 92.01 | 43.63 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 10.76 | 42.86 |
| Zm00001d024583_P003 | Maize | nucleus | 89.93 | 42.0 |
| EES13372 | Sorghum | nucleus | 90.05 | 41.9 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 90.62 | 41.36 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 10.88 | 41.23 |
| KRH40807 | Soybean | nucleus | 84.03 | 40.97 |
| KRH28855 | Soybean | nucleus | 85.88 | 40.61 |
| PGSC0003DMT400009249 | Potato | nucleus | 86.34 | 40.57 |
| Solyc02g083350.2.1 | Tomato | nucleus | 86.34 | 40.41 |
| KRH76591 | Soybean | nucleus | 85.19 | 40.28 |
| AT4G35800.1 | Thale cress | nucleus | 84.03 | 39.48 |
| Bra010510.1-P | Field mustard | nucleus | 83.33 | 39.47 |
| CDY08876 | Canola | nucleus | 64.58 | 34.47 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 5.67 | 33.11 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 5.44 | 31.76 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 27.66 | 31.32 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 40.05 | 30.84 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 5.44 | 29.19 |
| CDX69166 | Canola | cytosol | 84.38 | 27.61 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 8.91 | 27.3 |
| CDX75527 | Canola | nucleus | 82.64 | 26.29 |
| Bra011638.1-P | Field mustard | nucleus | 81.25 | 25.91 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 37.15 | 22.53 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 29.63 | 14.4 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 5.56 | 12.63 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 20.6 | 11.88 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 22.11 | 9.69 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 12.04 | 8.12 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 0.0 | 0.0 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.2.1 |
| Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A287STC6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| EnsemblPlantsGene:HORVU5Hr1G114340 | EnsemblPlants:HORVU5Hr1G114340.1 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | UniParc:UPI000B462CB8 | SEG:seg | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287STC6]
Coordinates
chrchr5H:+:643703575..643708381
Molecular Weight (calculated)
97085.4 Da
IEP (calculated)
8.373
GRAVY (calculated)
-0.428
Length
864 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARFAYSPA EVAKVQLVQF GVLSPDEIRQ MSVAVIEHAE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
101: IMRCVCFNCS KILADEDDEK DNKFKQALRI KNPKNRLRKI QEACKGKKVC AAGEDDLEGH AQMDTDEPVK KKGGCGAQQP KITVDGMKMV AEFKTTNKKN
201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVFPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGAPA
301: HIITEFAQLL QFHIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNMTY PETVTPYNIE
401: RLKELVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ITKRDTLIEK DVFMNILMWW EDFAGKVPAP AILKPRPIWT GKQVFNLIIP
601: KQINLIRFSA WHDEKESGYI TPGDTIVRIE KGELLSGILC KKTLGTSTGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QHGFSIGIGD TIADAATMEK
701: ITETIKDATN EVNELIQQAR DKKLEPEPGR TMIESFENKV NQVLNKARDV SGSSAQQSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPFG
801: FAGRTLPHFT QNDDSPESRG FVENSYLRGL TPTEFFFHAM GGREGLIDTA VKTSETGYIQ RRLV
101: IMRCVCFNCS KILADEDDEK DNKFKQALRI KNPKNRLRKI QEACKGKKVC AAGEDDLEGH AQMDTDEPVK KKGGCGAQQP KITVDGMKMV AEFKTTNKKN
201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVFPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGAPA
301: HIITEFAQLL QFHIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNMTY PETVTPYNIE
401: RLKELVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ITKRDTLIEK DVFMNILMWW EDFAGKVPAP AILKPRPIWT GKQVFNLIIP
601: KQINLIRFSA WHDEKESGYI TPGDTIVRIE KGELLSGILC KKTLGTSTGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QHGFSIGIGD TIADAATMEK
701: ITETIKDATN EVNELIQQAR DKKLEPEPGR TMIESFENKV NQVLNKARDV SGSSAQQSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPFG
801: FAGRTLPHFT QNDDSPESRG FVENSYLRGL TPTEFFFHAM GGREGLIDTA VKTSETGYIQ RRLV
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.