Factsheet for GSMUA_Achr1P14890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35800.1	GSMUA_Achr10P...	AT1G49590.1	23524848
AT4G35800.1	GSMUA_Achr10P...	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71816	Canola	cytosol	45.93	77.19
Solyc02g083230.2.1	Tomato	cytosol, nucleus, peroxisome	36.95	67.05
HORVU5Hr1G114340.1	Barley	nucleus	80.79	44.79
TraesCS7D01G182500.1	Wheat	cytosol	81.0	44.7
TraesCS7A01G180700.1	Wheat	cytosol	80.38	44.2
TraesCS7B01G085700.1	Wheat	cytosol	79.96	44.12
HORVU7Hr1G037130.2	Barley	nucleus	81.63	42.97
VIT_00s0264g00070.t01	Wine grape	nucleus	25.05	30.53
TraesCS2D01G427500.2	Wheat	nucleus	80.58	26.24
GSMUA_Achr3P00590_001	Banana	nucleus	72.03	24.5
KRH40807	Soybean	nucleus	86.22	23.31
EES13372	Sorghum	nucleus	90.19	23.26
KRH76591	Soybean	nucleus	88.52	23.21
KRH28855	Soybean	nucleus	88.52	23.21
Zm00001d024583_P003	Maize	nucleus	89.56	23.19
TraesCS7B01G202000.2	Wheat	nucleus	88.73	22.95
TraesCS7D01G297100.1	Wheat	nucleus	88.73	22.86
TraesCS7A01G301900.1	Wheat	nucleus	88.31	22.75
PGSC0003DMT400009249	Potato	nucleus	87.27	22.73
Solyc02g083350.2.1	Tomato	nucleus	87.47	22.7
Os05t0151000-00	Rice	nucleus	87.27	22.69
TraesCS2D01G571500.1	Wheat	nucleus	86.85	22.45
TraesCS2B01G622300.1	Wheat	nucleus	87.06	22.43
TraesCS2A01G558100.1	Wheat	nucleus	86.64	22.34
TraesCS5B01G499000.1	Wheat	nucleus	84.55	22.29
TraesCS5D01G499000.1	Wheat	nucleus	84.55	22.13
HORVU5Hr1G114400.2	Barley	nucleus	82.25	22.12
HORVU2Hr1G126750.3	Barley	nucleus	87.27	22.08
AT4G35800.1	Thale cress	nucleus	84.55	22.02
Bra010510.1-P	Field mustard	nucleus	83.3	21.88
TraesCS5D01G498900.1	Wheat	nucleus	84.34	21.87
EES08565	Sorghum	nucleus	83.51	21.3
TraesCS5B01G498800.1	Wheat	nucleus	79.33	20.86
CDY08876	Canola	nucleus	62.21	18.41
CDX69166	Canola	cytosol	82.05	14.89
CDX75527	Canola	nucleus	80.38	14.18
Bra011638.1-P	Field mustard	nucleus	77.45	13.7
GSMUA_Achr5P29280_001	Banana	nucleus	30.69	9.27
GSMUA_Achr3P28430_001	Banana	nucleus	24.84	7.94
GSMUA_Achr7P08010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.43	6.91
GSMUA_Achr3P05700_001	Banana	nucleus	10.23	3.42
GSMUA_Achr8P12010_001	Banana	golgi	9.81	2.81
GSMUA_Achr1P14900_001	Banana	nucleus	3.34	1.43
VIT_00s0264g00080.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.20.120.1280	Gene3D:2.40.40.20	Gene3D:3.30.1490.180	MapMan:35.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:GSMUA_Achr1G14890_001	EnsemblPlants:GSMUA_Achr1P14890_001	EnsemblPlants:GSMUA_Achr1T14890_001	UniProt:M0RZZ7
PFAM:PF00623	PFAM:PF04997	PANTHER:PTHR19376	PANTHER:PTHR19376:SF37	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1
InterPro:RNA_pol_asu	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0002963C88	SEG:seg	:

Description

DNA-directed RNA polymerase II subunit RPB1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14890_001]

Coordinates

chr1:+:11245843..11248391

Molecular Weight (calculated)

54043.6 Da

IEP (calculated)

9.225

GRAVY (calculated)

-0.523

Length

479 amino acids

Sequence
(BLAST)

001: MDTRFPFSPA EVAKVRTVQF GILSPDEIRQ MSVVQIEHGE TMERGKPKPA GLSDPRLGTI DRKMKCETCM ANMAECPGHF GHLELAKPMF HIGFLKTVLA
101: IMRCVCFNCS KILADEEDTR FKQALKIRNP KNRLKRIYDA CKSKKKCSGG DDIDVQGQQD SEEPMKKSRG GCGAQQPNIT IDGMKMVAEY KAPKKKSDEQ
201: EQLPEPAERK QILSAERVLS VLKRISDEDC LLLGLNPKYA RPDWMILQVL PIPPPPVRPS VMMDTSSRSE DDLTHQLAMI IRHNENLRRQ ERNGAPAHII
301: SEFAQLLQFH IATYFDNELP GQPRATQRSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
401: ELVEYGPHPP PGKTGAKYII REDGQRLDLR YLKKSSDHHL ELGYKASLYN WSSAICVMVT LFFSTGSPVS TKCPSWGTR

Best Arabidopsis Sequence Match ( AT4G35800.1 )
(BLAST)

0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP

Arabidopsis Description

NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.