Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G558100.1 | Wheat | nucleus | 98.87 | 98.92 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 98.39 | 98.7 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 97.53 | 95.77 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 93.17 | 93.52 |
| Zm00001d024583_P003 | Maize | nucleus | 90.1 | 90.54 |
| EES13372 | Sorghum | nucleus | 90.16 | 90.25 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 53.09 | 87.97 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 40.88 | 87.56 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.43 | 87.06 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 84.83 | 86.79 |
| KRH28855 | Soybean | nucleus | 84.02 | 85.5 |
| KRH76591 | Soybean | nucleus | 83.86 | 85.33 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 83.49 | 85.18 |
| Solyc02g083350.2.1 | Tomato | nucleus | 84.51 | 85.1 |
| PGSC0003DMT400009249 | Potato | nucleus | 84.08 | 84.99 |
| KRH40807 | Soybean | nucleus | 80.1 | 84.03 |
| Bra010510.1-P | Field mustard | nucleus | 81.98 | 83.55 |
| AT4G35800.1 | Thale cress | nucleus | 82.57 | 83.47 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.67 | 82.2 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 61.7 | 81.46 |
| CDY08876 | Canola | nucleus | 68.69 | 78.88 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 6.89 | 77.58 |
| CDY71816 | Canola | cytosol | 11.67 | 76.14 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.38 | 72.77 |
| Bra011638.1-P | Field mustard | nucleus | 78.7 | 54.01 |
| CDX69166 | Canola | cytosol | 76.17 | 53.64 |
| CDX75527 | Canola | nucleus | 78.11 | 53.46 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 25.34 | 33.76 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 24.85 | 33.05 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 20.66 | 23.05 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 14.09 | 18.36 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 15.55 | 18.14 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 14.09 | 17.01 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 13.66 | 16.56 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 16.89 | 16.12 |
Protein Annotations
Description
No Description!
Coordinates
chr2B:-:796343380..796352691
Molecular Weight (calculated)
206443.0 Da
IEP (calculated)
6.065
GRAVY (calculated)
-0.483
Length
1859 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFPHSPA EVAKVKLVQF GVLSPDEIRQ MSVVMIEHAE TMERGKVKPG GLSDPRLGTI DRKLKCDTCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: VMRCVCFNCS KILADEEDTK FQQALKIKNP KNRLRRIYDA CKSKKVCSGG EDLEGQDQQD TEEPVKKKGG CGAQQPNITV DGMKMVAEFK TTKKKNDEQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPEFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRSKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKMTKR DTLIEKDVFM NILMWWEDFD GKVPAPTILK PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TENGFTTPGD TVVRIEKGEL LSGTLCKKTL GASSGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD ADTMEKINET
0701: IANAKIEVNG LIKQAQEKEL EPEPGRTMME SFENRVNQVL NKARDESGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKDE FDNVFRYELN DMNWKPNYML PDHVEDLKTI REFRNVFEAE LQKLEADRLQ LGQEITTTGE GTWPMPVNLK RLIWNAQKTF KIDLRKPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLLFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSIFLK PGVNSRKESA KNVQCALEYT TLRSVTHATE IWYDPDPLGT LIPEDVDFVR SYYEMPDEDV
1201: DPDKMSPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIA NDEAPPKGGE AQGESAEDDV FLKKIEGNML TEMALRGIPD
1301: INKVFIKKGK VNKFDEKEGF KGEEEWMLDT EGVNLLAVMC HEDVDPSRTT SNHLIEVIEV LGIEAVRRSL LDELRVVISF DGSYVNYRHL AILCDTMTYR
1401: GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAVYAES DYLRGVTENI MLGRLAPIGT GGCGLYLNDQ MLKQAIELQL PSYIDTLDYG VTPARSPISG
1501: TPYHDGMMSP LLSPNFRASP LSDAQFSPYV GGMAFSPMPS NYSPSSGGYS PSSPVFSPGP GHSYSPTSPS YSPASPSYSP ASPSYTPGSP SYSPSSPSYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPA YCPTSPAYSP TSPAYCPTSP AYSPSSPSYN PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPSSPT YSPTSPSYRP TSPSYSPTSP AYSPTSPGYC PTSPSYSPTS PSYSPSSAKY SPSHIYSPSS PRMMSPYSQT SPNYSPTSPS YSPTSPSYAQ
1801: PSPSYSPTSP ITTSGGPSPD YTPTSPNYSP TASYSPTAPG YSPTSTEPQT SDKDKGAAP
0101: VMRCVCFNCS KILADEEDTK FQQALKIKNP KNRLRRIYDA CKSKKVCSGG EDLEGQDQQD TEEPVKKKGG CGAQQPNITV DGMKMVAEFK TTKKKNDEQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPEFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRSKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKMTKR DTLIEKDVFM NILMWWEDFD GKVPAPTILK PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TENGFTTPGD TVVRIEKGEL LSGTLCKKTL GASSGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD ADTMEKINET
0701: IANAKIEVNG LIKQAQEKEL EPEPGRTMME SFENRVNQVL NKARDESGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKDE FDNVFRYELN DMNWKPNYML PDHVEDLKTI REFRNVFEAE LQKLEADRLQ LGQEITTTGE GTWPMPVNLK RLIWNAQKTF KIDLRKPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLLFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSIFLK PGVNSRKESA KNVQCALEYT TLRSVTHATE IWYDPDPLGT LIPEDVDFVR SYYEMPDEDV
1201: DPDKMSPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIA NDEAPPKGGE AQGESAEDDV FLKKIEGNML TEMALRGIPD
1301: INKVFIKKGK VNKFDEKEGF KGEEEWMLDT EGVNLLAVMC HEDVDPSRTT SNHLIEVIEV LGIEAVRRSL LDELRVVISF DGSYVNYRHL AILCDTMTYR
1401: GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAVYAES DYLRGVTENI MLGRLAPIGT GGCGLYLNDQ MLKQAIELQL PSYIDTLDYG VTPARSPISG
1501: TPYHDGMMSP LLSPNFRASP LSDAQFSPYV GGMAFSPMPS NYSPSSGGYS PSSPVFSPGP GHSYSPTSPS YSPASPSYSP ASPSYTPGSP SYSPSSPSYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPA YCPTSPAYSP TSPAYCPTSP AYSPSSPSYN PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPSSPT YSPTSPSYRP TSPSYSPTSP AYSPTSPGYC PTSPSYSPTS PSYSPSSAKY SPSHIYSPSS PRMMSPYSQT SPNYSPTSPS YSPTSPSYAQ
1801: PSPSYSPTSP ITTSGGPSPD YTPTSPNYSP TASYSPTAPG YSPTSTEPQT SDKDKGAAP
0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.