Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G064400.1 | Wheat | nucleus | 90.77 | 88.49 |
| TraesCS4D01G241400.1 | Wheat | nucleus | 90.77 | 87.94 |
| Zm00001d036620_P001 | Maize | nucleus | 59.66 | 62.19 |
| PGSC0003DMT400056014 | Potato | cytosol | 23.61 | 61.11 |
| Os06t0670400-00 | Rice | cytosol | 60.09 | 59.7 |
| EER88795 | Sorghum | cytosol | 70.39 | 58.68 |
| Os06t0670500-01 | Rice | cytosol | 69.96 | 57.8 |
| TraesCS7B01G371900.1 | Wheat | nucleus | 69.31 | 57.78 |
| PGSC0003DMT400011164 | Potato | cytosol | 21.89 | 55.14 |
| GSMUA_Achr10P... | Banana | cytosol | 62.02 | 52.17 |
| PGSC0003DMT400069100 | Potato | cytosol | 38.2 | 51.9 |
| PGSC0003DMT400011166 | Potato | nucleus | 32.4 | 51.71 |
| AT1G53720.1 | Thale cress | nucleus | 53.43 | 49.21 |
| Bra030819.1-P | Field mustard | cytosol | 54.08 | 46.32 |
| Solyc07g066420.2.1 | Tomato | nucleus | 56.22 | 44.63 |
| KRH13056 | Soybean | nucleus | 57.94 | 42.65 |
| KRG93223 | Soybean | nucleus | 58.37 | 42.5 |
| VIT_19s0027g01660.t01 | Wine grape | nucleus | 57.94 | 42.32 |
| CDY72459 | Canola | cytosol, extracellular, plastid | 10.52 | 41.88 |
| TraesCS7B01G180900.1 | Wheat | cytosol | 13.52 | 38.41 |
| CDY10512 | Canola | nucleus | 54.51 | 25.6 |
| TraesCS3B01G239300.1 | Wheat | nucleus | 21.24 | 19.8 |
| TraesCS2B01G255000.1 | Wheat | mitochondrion | 7.73 | 15.45 |
| TraesCS4B01G260100.1 | Wheat | cytosol | 16.52 | 13.05 |
| TraesCS7B01G175400.1 | Wheat | cytosol | 13.95 | 10.03 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | Gene3D:3.30.70.330 | InterPro:CRIP | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_dom | InterPro:Cyclophilin_PPIL4 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR002130 | InterPro:IPR012677 | InterPro:IPR029000 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00160 | PRINTS:PR00153 | PFscan:PS50072 | PFscan:PS50102 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF156 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF50891 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS4B01G241800 | EnsemblPlants:TraesCS4B01G241800.1 | TIGR:cd01921 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4B:-:500286014..500287446
Molecular Weight (calculated)
53081.3 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.960
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLVVTSVG DLVVDLHTDQ CPRATYNFLK LCKMKYYNGC LFHKVAKGFV AHTGDPTGTG NGGDSVYKFL HGDQARFFDD EIHPELRHSK IGTVAMASAG
101: QNRNASQFYI TLRDDVEYLD DKHTVFGIVA EGEGLDTLTK INESYVDGDG RPFKDIRIKH TYVLYDPDDD PAELAELIPP NSPIGKPIDE IAEERLEDTW
201: VPLDETVDPV QLQEMIRSKE AHTNAVILAS IGDIPDAEVK PPDNDEDLYT IFSRIGTVTS AETIRDYKTG DSLCYAFVEF EAKEACECAH RDMNNCLIDD
301: RRIQVDFSQS VSKLWRQFRQ GTRNASKDGC FKRHAPDYRA RDLDKGAEKK NKDRDYVLRD ENTQRGGSNH RSYDLVFDED GASAGNKQDH RNGDRRKAQK
401: LGDCRSEVPH KRDRDRNNRD KLHTSEGGGR RHDDHISYDR SSDRSYSRRN NRDYGKQQSK SRRRDD
101: QNRNASQFYI TLRDDVEYLD DKHTVFGIVA EGEGLDTLTK INESYVDGDG RPFKDIRIKH TYVLYDPDDD PAELAELIPP NSPIGKPIDE IAEERLEDTW
201: VPLDETVDPV QLQEMIRSKE AHTNAVILAS IGDIPDAEVK PPDNDEDLYT IFSRIGTVTS AETIRDYKTG DSLCYAFVEF EAKEACECAH RDMNNCLIDD
301: RRIQVDFSQS VSKLWRQFRQ GTRNASKDGC FKRHAPDYRA RDLDKGAEKK NKDRDYVLRD ENTQRGGSNH RSYDLVFDED GASAGNKQDH RNGDRRKAQK
401: LGDCRSEVPH KRDRDRNNRD KLHTSEGGGR RHDDHISYDR SSDRSYSRRN NRDYGKQQSK SRRRDD
001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
Arabidopsis Description
CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.